Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0275 ATGGCTTTGCCTTCGCTTATTTCCAATATTGTTCTTCTGTTTCTTTTCTCTTTCAACAAAAAAGCTTTAGCTGTGTCAAAGCTTTCAGTAACTGACAATGATAATTATGTTAGCCGGGAATTACAGGCAGAACAAGAAGCTGATAGAGTTTATAGATTACCAGGGCAACCACCAGTAAAATTCAAACAATATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCATTGTTTTATTGGTTCTTTGAAGCCACTTTCAAACCAGAGGAAAAACCAGTTTTATTGTGGCTAAATGGAGGCCCAGGTTGTTCCTCAATCGGTTATGGAGAAGCAGAGGAGTTAGGACCCTTTTTTCCCCAGAACAGCAGGCAGCCACAGCTAAAGTTGAACCCTTATTCATGGAACAATGCTGCCAATCTTTTGTTTTTGGAAAGCCCTGTCGGAGTGGGATTCTCCTACACCAACACCAGCAGGGATTTGTACGAACTCGGTGACGCCATTACTGCTAAGGATTCACACACCTTCATAGTCAAGTGGTTCGATAGATTTCCGCAATTCAGAACACGCGAGTTCTACATTGCAGGCGAAAGCTATGGAGGGCACTACGTTCCACAACTGTCGGAGCTCATTTTCGATAACAATCGCAATCCTGCCATGAAAGACTATATCAAATTCAAAGGATTCATGATTGGGAATGCAGTATTGGACGTCGAAACAGATCAAAAGGGTTATGTAGATTATGCCTGGAACCATGCAGTGATATCTGATGGATTATACCATAACATTACAACCAAATGCAATTTCAAACTTGAAAATCAAACAGCTGAATGCAATGAATATCTGGATAAGCTCTCCAATGCGTATGACGTTATTGACATGTATAGCTTGTATACTCCCTTATGTCTCAGCAACATCAGCAGCACAACCACAAAAGCTTTTTCCAAAATTAATAAATGGCCTAAAAAGGCAGTTGGGTATGATCCCTGTGCATCTGATTACACTGGAGTTTACCTAAACAGGCCAGAAGTCCAAAAGGCACTACATGCCAATGTCACCAAACTTTCATATCCATGGACTCATTGCAGTAACATCATCGATGGTTGGAATGACGCACCAGCATCCATTCTTCCTGTCATCAAGAAGCTTGCTGCTGCTGGTATTCGCATTTGGGTTTACAGTGGAGATACTGATGGAGCAGTTCCTGTGACTGGAACAAGATACAGTTTACAAAGGTTGGGGCTGCGCATTGTTGAAGATTGGACTCCCTGGTATACCAGCCAGCAGGTTGGAGGATGGAGAACGATTTACGATGGGCTTACTTTTGTGACCATAAGAGGTGCTGGCCACCAGGTTCCGACCTACACTCCTGAACCAGCTCTGCAGCTGCTGCAACACTTCCTTGCAAATCGGAAATTACCGTCTCAACCAATTTAA 1437 0.4273 MALPSLISNIVLLFLFSFNKKALAVSKLSVTDNDNYVSRELQAEQEADRVYRLPGQPPVKFKQYAGYITVNETHGRALFYWFFEATFKPEEKPVLLWLNGGPGCSSIGYGEAEELGPFFPQNSRQPQLKLNPYSWNNAANLLFLESPVGVGFSYTNTSRDLYELGDAITAKDSHTFIVKWFDRFPQFRTREFYIAGESYGGHYVPQLSELIFDNNRNPAMKDYIKFKGFMIGNAVLDVETDQKGYVDYAWNHAVISDGLYHNITTKCNFKLENQTAECNEYLDKLSNAYDVIDMYSLYTPLCLSNISSTTTKAFSKINKWPKKAVGYDPCASDYTGVYLNRPEVQKALHANVTKLSYPWTHCSNIIDGWNDAPASILPVIKKLAAAGIRIWVYSGDTDGAVPVTGTRYSLQRLGLRIVEDWTPWYTSQQVGGWRTIYDGLTFVTIRGAGHQVPTYTPEPALQLLQHFLANRKLPSQPI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0275 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vra2g0275 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vra2g0275 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vra2g0275 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 440 453 IPR001563 GO:0004185|GO:0006508
Vra2g0275 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 477 IPR001563 GO:0004185|GO:0006508
Vra2g0275 478 ProSitePatterns Serine carboxypeptidases, histidine active site. 440 457 IPR033124 GO:0004185
Vra2g0275 478 PANTHER CARBOXYPEPTIDASE 34 477 - -
Vra2g0275 478 Pfam Serine carboxypeptidase 54 470 IPR001563 GO:0004185|GO:0006508
Vra2g0275 478 Gene3D alpha/beta hydrolase 44 304 IPR029058 -
Vra2g0275 478 SUPERFAMILY alpha/beta-Hydrolases 45 473 IPR029058 -
Vra2g0275 478 Gene3D - 330 367 - -
Vra2g0275 478 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vra2g0275 478 Gene3D - 376 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0275 Vra-Chr2 2071838 2074529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0275 332 473 Calmodulin-binding Proteins AT2G22960 28.082 7.64e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0275 K16297 - gmx:100797264 762.681