Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0258 ATGGGAGAAGAAGGTATTTGGAAAGATGTTACAAAGCAAGGGATCAACCCCGGAAAGGCTACCATATTAGCTCTTGGCAAGGCTTTCCCTCCTCAGCTTGTCATGCAAGAGTTTTTAGTTGATGGATATTTCAGGAGCACAAACTGTGACAATCCTGAGCTTAAGCAGAAGCTCGCTAGACTTTGCAAAACAACTACAGTGAAAACAAGGTACGTGGTTATGTCGGAGGAAATACTGATGAAGTATCCAGAACTTGTTTCTGAAGGGATCCCTACAGTGAAGCAGCGGCTAGAGATATGTAACGAGGCAGTGACAGAAATGGCCATTGAGGCTTCACAAGCTTGCATGAAGAACTGGGGTGGATCATTAGCAGACATAACACACTTGGTTTATGTCTCATCAAGTGAAGCAAGACTACCTGGTGGTGACCTTTACCTGGCGAAAGGATTAGGACTGAGCCCTGATACTCAACGAATCATGCTCTACTTCGCTGGTTGTTCAGGTGGTGTGGCTGGCCTGCGTGTTGCAAAAGACATAGCTGAGAACAACCCTGGAAGTAGGGTGCTGCTTGCTACCTCAGAAACTACAATTATAGGGTTCAAGCCACCAAGTGCAGATAGACCCTATGATCTTGTGGGGGTGGCACTCTTTGGGGATGGTGCTGCTGCCATGATAATTGGCTCAGACCCAATATTGGAGTATGAGAAGCCTCTCTTTGAGCTTCACACTGCAGTTCAGGAGTTTTTGCCACATACTGAGAAGAAAATTGATGGGAGGCTGACAGAAGAGGGGATAAGCTTCAAGCTAGCAAGGGAACTTCCTCAGATAATTGAAGACTCTGTTGAAGGATTCTGTGACAAATTAATGAGTGTTGTAGGGTTCCAGAATAAGGAGTACAACGAGCTATTCTGGGCTGTCCATCCAGGGGGACCAGCCATCTTAAATCGCATTGAGAAAAGACTTGATTTGTTACCAGAGAAGCTAAGTGCAAGTAGAAGGGCTCTCATGGACTATGGCAATGCTAGCAGTAATACCATTGTGTATGTGCTGGAGTATATGATAGAGGAGGGTCTCAAGACTAGAAGAGATGATAGAGAAGATCATGAATGGGGTTTGATACTTGCATTTGGACCTGGAATTACATTCGAGGGAATTCTTGCCAGGAACTTGTGTGCTTTAAATGTCACATAA 1191 0.45 MGEEGIWKDVTKQGINPGKATILALGKAFPPQLVMQEFLVDGYFRSTNCDNPELKQKLARLCKTTTVKTRYVVMSEEILMKYPELVSEGIPTVKQRLEICNEAVTEMAIEASQACMKNWGGSLADITHLVYVSSSEARLPGGDLYLAKGLGLSPDTQRIMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAAAMIIGSDPILEYEKPLFELHTAVQEFLPHTEKKIDGRLTEEGISFKLARELPQIIEDSVEGFCDKLMSVVGFQNKEYNELFWAVHPGGPAILNRIEKRLDLLPEKLSASRRALMDYGNASSNTIVYVLEYMIEEGLKTRRDDREDHEWGLILAFGPGITFEGILARNLCALNVT* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0258 396 Pfam Chalcone and stilbene synthases, N-terminal domain 9 230 IPR001099 -
Vra2g0258 396 SUPERFAMILY Thiolase-like 237 388 IPR016039 GO:0016746
Vra2g0258 396 Gene3D - 238 393 IPR016039 GO:0016746
Vra2g0258 396 Gene3D - 5 237 IPR016039 GO:0016746
Vra2g0258 396 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 391 - -
Vra2g0258 396 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 391 IPR011141 GO:0009058|GO:0016747
Vra2g0258 396 SUPERFAMILY Thiolase-like 16 233 IPR016039 GO:0016746
Vra2g0258 396 CDD CHS_like 20 386 - -
Vra2g0258 396 PIRSF PKS_III 7 391 IPR011141 GO:0009058|GO:0016747
Vra2g0258 396 Pfam Chalcone and stilbene synthases, C-terminal domain 240 390 IPR012328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0258 Vra-Chr2 1978458 1980686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0258 86 377 Miscellaneous Gene Families AT4G34250 24.691 9.87e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0258 - - vun:114168705 773.081