Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0254 ATGGAGACAGATAGTGGGAGGCTGAGCAGGAAGAAAAGTGGTGGAAACGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACGACCAGGTTTTCACCACCTTCGTCGACAATAAGTTCCACCAGTTAGACACAGACAGAGATGGCAAACTCTCTGTGAAAGAGCTCCAACCTGCTGTTGCTGACATAGGTGCTGCTCTCGGCCTCCCTCCTCACGGCACCAATCCTGATTCTGATCACATCTATTCCGAGGTGTTGAATGAATTCACTCATGGGAAGCAGGAAAAAGTGAGCAAAACTGAGTTCAAAGAGGTTCTCTCTGATATTCTCTTGGGTATGGCTGCTGGACTGAAGCGTGACCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTCTGGAATTTGTTAATGGTTCGGCTTATGAAGCAGAAATGGCGTCTATATTCTCTCATATTGAATCCCCTAACAGATCACTGCATGACCATATAATTGAAGCTCTTGGCAAGCTCACTGTGGAACAAGGAATTCCTCCTACAGCAGATTCTTGGGTTTTAAGCAACATTGTAGAACCGGCACTGCTATCTCTAGATAGATCTGGGTTGGACAAGCCTGTTTCTCAGGAGACATTTTTGGAGGAATTTAAGGTAGTGGCATTGGCTGTCGCTAATCGTCTTAAGGAGCAACCAGTCATAGTTGCTCACAGTGAGAACATCTTTGATGGAAGTGGTGTTAAGAGACTACTATCCAATAAGTTCGAATTGGACAAGACTTTGAACTCTGCTTTAGAGACTTTGCCTAAAGATCGAAATGGAAAGATGTCAAAAGAATATCTACGGGTGGCACTGGACGCGCTGGCTCCATCTGCTGGTTTACCTCCCCTTGGTGCCATTGAAGAGATGGATAAGGTTATTGGTGAAGTGTTTAAGATGGCGAATGCAGATGAAGCGAAGATGGTGAAAGAAGAGGAGTTCAAGAAAGTTTTAACTGAAATACTGGGAAGCATTATGTTGCAGTTGGAGGGAAGTCCCATATCGGTTTCTTCAAATTCTGTAGTGCACGAGCCTCTAGACTCATCTTCCACACTTCTTCAGCCATCCTCTAGTGAAACTGCACCCTAG 1128 0.4477 METDSGRLSRKKSGGNGQVLDGSNIMELVGNDQVFTTFVDNKFHQLDTDRDGKLSVKELQPAVADIGAALGLPPHGTNPDSDHIYSEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSAYEAEMASIFSHIESPNRSLHDHIIEALGKLTVEQGIPPTADSWVLSNIVEPALLSLDRSGLDKPVSQETFLEEFKVVALAVANRLKEQPVIVAHSENIFDGSGVKRLLSNKFELDKTLNSALETLPKDRNGKMSKEYLRVALDALAPSAGLPPLGAIEEMDKVIGEVFKMANADEAKMVKEEEFKKVLTEILGSIMLQLEGSPISVSSNSVVHEPLDSSSTLLQPSSSETAP* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0254 375 MobiDBLite consensus disorder prediction 350 375 - -
Vra2g0254 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 373 - -
Vra2g0254 375 SUPERFAMILY EF-hand 42 343 IPR011992 -
Vra2g0254 375 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Vra2g0254 375 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 373 - -
Vra2g0254 375 Pfam EF-hand domain pair 42 108 IPR002048 GO:0005509
Vra2g0254 375 SMART efh_1 38 66 IPR002048 GO:0005509
Vra2g0254 375 SMART efh_1 260 288 IPR002048 GO:0005509
Vra2g0254 375 SMART efh_1 306 334 IPR002048 GO:0005509
Vra2g0254 375 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0254 375 Gene3D - 38 336 - -
Vra2g0254 375 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0254 Vra-Chr2 1968544 1973470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0254 18 373 EF-hand Containing Proteins AT4G38810 68.802 7.21e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0254 - - gmx:100820516 650.203