Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0223 ATGGAGATTGAGGCAGCAGCAGCAGCAGCCACCGATCGGAACAAAGCCTTCAACTGGGGTGCTGCTGCTACTGATCAAACTCAGAGGGATCTTCCATACACAGGCTTTGACAGAGGAAGCTTTTTGGCTTGGCAAGATCTCAGAGTTGTGCTTCCAAACTTTGGAAAAGGACCCACCAAACGATTGCTCAATGGTCTCAATGGCTATGCTGAGCCTGGCAGAATCATGGCCATCATGGGTCCTTCTGGTTCTGGAAAATCTACTCTTCTTGATGCACTTGCAGGTAGACTCTCAAAAAATGTGGTTATGACAGGAAATGTTCTTCTAAATGGGAAGAAAAAAAGCCTAGGTTACGGCGGTGTTGCGTACGTAACTCAAGAGGATGTGCTTCTGGGAACTCTTACTGTGAAGGAAACTGTATCCTACTCGGCCCATCTACGTCTTCCAACATCAATGAGCAAAGAAGAAGTTAACAGCTTGGTGGATGGAACAATCATAGAAATGGGTCTCCAAGATTGTGCTGATAGGTTGATTGGTAACTGGCACTTGAGAGGTATAAGTGGAGGGGAGAAGAAGAGGCTTAGCATTGCACTTGAGATCCTTACAATGCCTCGTTTACTGTTCCTTGATGAACCCACCAGTGGCCTTGACAGTGCCTCTGCATTTTTTGTCGTTCAAACTCTCAGAAATGTTGCTCGTGATGGAAGAACTGTTATCTCTTCCATTCACCAGCCCAGCAGTGAAGTCTTTACACTCTTTGATGACCTTTTCTTGCTATCTGGCGGTGAAACAGTATATTTTGGAGAAGCAAAATCTGCAATTGAGTTTTTTGCTGAAGCTGGTTTCCCTTGTCCACGCAAAAGAAATCCTTCTGATCACTTCCTACGGTGCATCAATTCTGATTTCGACATTGTTACAGCTACGTTGAAGGGATCTCAGAGAATTCATGATGTTCCAAACTCAGCAGATCCTTTCATGAATTTGGCTACAGCAGAGATTAAGTCAATGCTAGTTGAGAAATATAGGCGTTCGGCATATGCCAGAAGGGCAAAGACCAGAATTCAAGAACTATCTACAGACGAAGGGCTTCAACCTCAGACACAAAATGGAAGTCAAGCTAGTTGGTGGAAGCAACTCTCAACTTTGACAAAGAGATCATTTGTGAACATGTGCAGAGATGTGGGGTACTACTGGTTGAGGATCATAATTTACATCATTGTGTCCATATGTGTGGGAACAGTTTATTTTGACATTGGCTACAGCTACACTTCCATTCTGGCCCGAGGTGCCTGTGGTGCATTCATATCAGGATTTATGACATTCATGTCAATCGGGGGCTTTCCATCATTCATTGAAGAAATGAAGGTATTTTATCGAGAAAGGCTCAATGGATACTATGGAGTTGCAGCATATATTTTAGCCAATTTCCTTTCTTCTTTCCCATTCTTGGTTGCTATTGCTCTTACTTCTAGCACCATCACCTATAACATGGTGAAATTCAGGCCAGGGATAAGTCACTTTGTGTTCTTCACCTTCAACATCTACAGCTGCATCTCCGTAATAGAGAGCCTCATGATGGTTGTGGCTTCACTTGTTCCAAATTTCCTCATGGGAATAATTACAGGAGCTGGAATAATAGGAATCATGATGATGACCTCAGGATTCTTCAGGTTGCTGTCTGATCTTCCAAAACCAGTTTGGCGCTACCCAATTTCATATATCAGTTATGGTTCATGGGCAATTCAGGGTGCATACAAGAATGACTTGCTTGGGCTTGAGTTTGAGCCTCTGATACCTGGTGACAATAAACTGACTGGAGAATACGTGATCACACACATGTTAGGCATTGAATTAAACCATTCAAAGTGGTGGGATTTGGCAGCTCTATTTGTGATTCTGTTGGCTTACAGACTTCTGTTCTTCACTGTTCTGAAATTCAAGGAGAGAGCATCACCACTGTTTCAGACACTTTACGCCAAGAGAACAATCCAACAGCTTGAAAAGAGACCCTCTTTCAGGAAGATGCCATCTTTCCCTTCTCAGAGGCATCAACCCCTCCATTCACTTTCTTCTCAAGATGGTCTTGATTCTCCACTCAACTAA 2103 0.4332 MEIEAAAAAATDRNKAFNWGAAATDQTQRDLPYTGFDRGSFLAWQDLRVVLPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDALAGRLSKNVVMTGNVLLNGKKKSLGYGGVAYVTQEDVLLGTLTVKETVSYSAHLRLPTSMSKEEVNSLVDGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTMPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFTLFDDLFLLSGGETVYFGEAKSAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIHDVPNSADPFMNLATAEIKSMLVEKYRRSAYARRAKTRIQELSTDEGLQPQTQNGSQASWWKQLSTLTKRSFVNMCRDVGYYWLRIIIYIIVSICVGTVYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLVAIALTSSTITYNMVKFRPGISHFVFFTFNIYSCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGSWAIQGAYKNDLLGLEFEPLIPGDNKLTGEYVITHMLGIELNHSKWWDLAALFVILLAYRLLFFTVLKFKERASPLFQTLYAKRTIQQLEKRPSFRKMPSFPSQRHQPLHSLSSQDGLDSPLN* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0223 700 CDD ABCG_EPDR 39 268 - -
Vra2g0223 700 SMART AAA_5 72 243 IPR003593 -
Vra2g0223 700 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 39 695 - -
Vra2g0223 700 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 286 IPR003439 GO:0005524
Vra2g0223 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 278 IPR027417 -
Vra2g0223 700 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 39 695 - -
Vra2g0223 700 Pfam ABC-2 type transporter 378 587 IPR013525 GO:0016020|GO:0140359
Vra2g0223 700 Pfam ABC-2 type transporter 243 300 IPR043926 GO:0140359
Vra2g0223 700 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524
Vra2g0223 700 Gene3D - 43 280 IPR027417 -
Vra2g0223 700 MobiDBLite consensus disorder prediction 677 700 - -
Vra2g0223 700 MobiDBLite consensus disorder prediction 668 700 - -
Vra2g0223 700 Pfam ABC transporter 63 214 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0223 Vra-Chr2 1681713 1688412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0223 58 255 Calmodulin-binding Proteins AT2G36910 30.144 4.95e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0223 K05681 - gmx:100807692 1261.51