Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0222 ATGGAGATAGAAGCAGCCATTGCAAAGCAAAAGGGTGTTGCAGAGTGTAGAGAAGCCATGGAAGTTTCAGAAAAGAGAGGAATGTACCTTGTGTGGGAAGATTTAACTGTTGTGGTTCCAAATTTTGGAGATGGACACACTAAGAGATTGCTTAACGGGTTGAGTGGATATGCTGAACCTAACAAAATCATTGCTATAATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTCTAGCAGGAAGACTCTCCAGAAACGTTATCATGTCTGGAAATGTGTTTCTAAATGGAAAGAAGAGGAGATTGGACTATGGCGGTGCTGCTTACGTGACCCAAGAAGAGACAATGCTGGGAACTCTGACAGTGAGAGAGACGATATATTACTCAGCGAATCTAAGGCTTCCAGGGAGCATGAGAAGAGAAGAGGTGAATGAGATAATAGAAGGAACGATTATGGAAATGGGTCTTCAAGAATGTGCAGATCGGATAATAGGGAATTGGCATTTGAGAGGTATAAGCGGTGGAGAAAAGAGAAGACTGAGCATTGCTCTTGAAATCCTCACAAGGCCAACTCTCTTGTTCCTTGATGAACCCACCACTGGTCTTGACAGTGCCTCAGCATATTTTGTTGCTCAAACTCTCAGAAATTTAGCTCATGATGCAAAGACTGTTATCTCTTCTATACACCAACCAAGTAGTGAGGTTTTTGCACTCTTTGATCATCTCTTTCTTCTCTCTGGGGGTCAAACAATATACTTTGGACCTGCACAAAAGGCAACTCAGTTCTTTGCCAAAGCTGGATTCCCGTGTCCAAGTAGAAGAAACCCTGCTGATCATTTCCTCCATTGTATCAACTCAGACTTCGACGCTGTCACAACCATAATCACGGCCTCCCAAACAAGACAGGAAGGAGTACCATTATCAACTGCAGAAACCAAAGCAATACTTGTAGAAAAATACCGATGGTCAGAGCACGCAACCATTGCAAGAGCAAGAATCAAGGAAATCTCAAACATTGGAGGGATTGATTTTGAAAGTAAAAGCAAATGCAAAGCAAAATGGTGGAAGCAACTGCTAGTGCTGACTCAGAGATCTTTCGTGAACATGTCCAGAGATGTGGGATACTACTGGATTAGGATAACCATCTATATTGCCTTATCTTTGTGTGTTGGAACAATCTTCTATGAAGTTGGATCGAGTTACGGAGCCATTTTTGCTAGAGGAGCATGTGGTGCTTTTATCTCAGGTTTCATGACATTCATGTCCATAGGGGGCTTTCCTTCTTTTATAGAAGAAATGAAGGTCTTCAATAAAGAAAGAATGAATGGGTATTATGGGGTTGGAGTCTACATTCTCTCAAATTTTCTCTCTTCCTTACCCTTTGTGACAGTGATGTCCACTGCCACAGGGACAATAACCTATTACATGGTTAAGTTTCGGTCAGAATTTTCACATTTTGTGTATATCTGTCTGGATCTCATTGGGTGCATTGCGGTTGTGGAAAGCTCCATGATGATTATAGCTTCACTAGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCAGGATATATTGGTGTTATGATGATGACTGCTGGCTATTTCCGTCGGATCCCTGATCTTCCCAAGTTTTTCTGGCGTTATCCAATATCATACATCAATTATGGTGCATGGGGATTGCAGGGAGCTTACAAGAATGACATGATTGGGATGGAGTTTGAACCCTTAGAACCTGGAGCTCCAAAACTGAAAGGAGAATTCATCCTGAAAAGTGTGCTTGGAATTGAAATTGATAATTCAAAGTGGTGGGACTTAGGTGCAGTGATGATGATTCTGATAATGTTAAAGGTTCTTTTCTTTTTCATTCTGAAATTTAAGGAGACAGTTGGACCTTTGTTTTATAGCATCTACGCCAGGCAAACTCTTCACCGTATAAAGAAGAGAGCTTCATTCAGAAAAGGACCATCTTTCCCTTCCAAAAGACACCAATCACTGCATCCTTTGTCTGCTCAAGAGGGTCTCAACTCCCCTATTCATTAG 2046 0.4169 MEIEAAIAKQKGVAECREAMEVSEKRGMYLVWEDLTVVVPNFGDGHTKRLLNGLSGYAEPNKIIAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVFLNGKKRRLDYGGAAYVTQEETMLGTLTVRETIYYSANLRLPGSMRREEVNEIIEGTIMEMGLQECADRIIGNWHLRGISGGEKRRLSIALEILTRPTLLFLDEPTTGLDSASAYFVAQTLRNLAHDAKTVISSIHQPSSEVFALFDHLFLLSGGQTIYFGPAQKATQFFAKAGFPCPSRRNPADHFLHCINSDFDAVTTIITASQTRQEGVPLSTAETKAILVEKYRWSEHATIARARIKEISNIGGIDFESKSKCKAKWWKQLLVLTQRSFVNMSRDVGYYWIRITIYIALSLCVGTIFYEVGSSYGAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFNKERMNGYYGVGVYILSNFLSSLPFVTVMSTATGTITYYMVKFRSEFSHFVYICLDLIGCIAVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRRIPDLPKFFWRYPISYINYGAWGLQGAYKNDMIGMEFEPLEPGAPKLKGEFILKSVLGIEIDNSKWWDLGAVMMILIMLKVLFFFILKFKETVGPLFYSIYARQTLHRIKKRASFRKGPSFPSKRHQSLHPLSAQEGLNSPIH* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0222 681 Pfam ABC-2 type transporter 231 332 IPR043926 GO:0140359
Vra2g0222 681 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524
Vra2g0222 681 CDD ABCG_EPDR 27 256 - -
Vra2g0222 681 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Vra2g0222 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 25 675 - -
Vra2g0222 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 266 IPR027417 -
Vra2g0222 681 Gene3D - 17 269 IPR027417 -
Vra2g0222 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 25 675 - -
Vra2g0222 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 274 IPR003439 GO:0005524
Vra2g0222 681 SMART AAA_5 60 250 IPR003593 -
Vra2g0222 681 Pfam ABC-2 type transporter 359 568 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0222 Vra-Chr2 1669162 1675169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0222 49 245 Calmodulin-binding Proteins AT2G36910 28.899 2.72e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0222 K05681 - gmx:100788651 1137.87