Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0221 ATGGAGATAGAAGCAGCCACTGCTAAAGAAAAGGATGTTGCTGAGTGTGGAGAAACGATGGAAGTTTCAGAAAAGAGAGGAATGTACCTTGTGTGGGAAGATTTAACTGTTGTGGTTCCAAATTTCGGAGATGGACACACTAAGAGATTGCTTAACGGGCTGAGTGGATATGCTGAACCTAACAAAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCAACTCTTCTTGACGCTTTAGCAGGAAGACTCTCCAGAAACGTTATCATGTCTGGAAATGTGTTTCTAAATGGAAAGAAGAGGAGATTGGACTATGGCGGTGCTGCTTACGTGACCCAAGAAGAGACAATGCTGGGAACTCTGACAGTGAGAGAGACAATATATTACTCAGCGAATCTAAGGCTTCCAGGGAGCATGAGAAGAGAAGAGGTGAATGAGATAATAGAAGGAACGATTATGGAAATGGGTCTTCAAGAATGTGCAGATCGGATAATAGGGAATTGGCATTTGAGAGGTATAAGCGGTGGAGAAAAGAGAAGACTGAGCATTGCTCTTGAAATCCTCACAAGGCCAACTCTCTTGTTCCTTGATGAACCCACCACTGGTCTTGACAGTGCTTCAGCATATTTTGTTGCTCAAACTCTCAGAAATTTGGCTCATGATGCAAAGACTGTTATCTCTTCTATACACCAACCAAGTAGTGAGGTTTTTGCACTCTTTGATCATCTCTTTCTTCTCTCTGGGGGTCAAACAATATACTTTGGACCTGCACAAAAGGCAACTCAGTTCTTTGCCAAAGCTGGATTCCCATGTCCAAGTAGAAGAAACCCTTCTGATCATTTCCTTCGTTGTATCAATTCAGACTTCGACGCTGTCACAACCAAAATCAGGGCCTCCCAAACAAGACAAGAAGAAGTATCGTTATCAACTGCAGAAATCAAAGCAACACTCATAGAAAAATACCGATGGTCTGAGTATGCAACCGCTTCAAGAGAAAGAATCAAGGAAATATCAAACATAGAAGGACATGATTTTGAAAGTGAAAGGAAATGTGAATCCAGATGGTGGAAGGAACTATCAGTGCTGACTCGGAGATCTTTCGTGAACATGTCGAGAGATTTAGGATACTACTGGATAAGGATAACCACCTATATCGCCTTATCTTTGTGCGTTGGAATAATCTTCTATGATGTTGGAACGAGTTACAGAGCCATTTTTGCGAGAGGATCATGTGCTGGTTTTATCTCAGGTTTCATGACGTTCATGTCCATTGGGAGCTTCCCTTCTTTCTTAGAAGAAATGAAGGTCTTCTACAAAGAAAGAATGGGTGGTTATTATGGCGTTGGAGTCTACATTCTCTCAAATTTTCTATCTTCCTTTCCGTTTTTGGCAGTGATGTCCACTGCTACGGGGGCTATAAGCTATTATATGGTTAAGGCTAGTTCAGAATTTTCACACTTTTTGTATATCACTCTTGATCTTCTGGGCTGCATTGCGGTTGTGGAGAGCTCCATGATGGTTATAGCTTCACTGGTTCCCAACTTCCTCATGGGATTGACGATTGGAGCGGGATATATTGGTCTTATGATGATGACTTCTGGCTTTTTCCGTCCGCTCCCTGATATTCCCAAATTCTTCTGGCGTTACCCAATATCATACATCAATTACGGCGCATGGGGATTACAGGGGGCTTTCAAGAATGACTTGATTGGAATGGAGTTTGATCCCTTAGAACCTGGTGACCCGAAACTGAAAGGAGAATTTATCCTCAAAACCATGCTTGGAGTTCGAGTTGATAATTCAAAGTGGTGGGACATAGCTGCAATCATGATCATCCTCATATTGCTTAGAGTTCTTTTCTTTTTCATTCTCAAATTCAAGGAGAGAGCTGCACCTTTTCTTTATAGCATCTACGCCAGGCAAACTCTGCAACGTATAAAGAAGCGACCTTCGTTCAGGAAAGGACCATCTTTCCCTTCCAAACGCCACCAATCACTGCATCCCTTGTCTCCTCAAGAGGATCTCAACTCGCTCATTCATTAG 2046 0.4242 MEIEAATAKEKDVAECGETMEVSEKRGMYLVWEDLTVVVPNFGDGHTKRLLNGLSGYAEPNKIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVFLNGKKRRLDYGGAAYVTQEETMLGTLTVRETIYYSANLRLPGSMRREEVNEIIEGTIMEMGLQECADRIIGNWHLRGISGGEKRRLSIALEILTRPTLLFLDEPTTGLDSASAYFVAQTLRNLAHDAKTVISSIHQPSSEVFALFDHLFLLSGGQTIYFGPAQKATQFFAKAGFPCPSRRNPSDHFLRCINSDFDAVTTKIRASQTRQEEVSLSTAEIKATLIEKYRWSEYATASRERIKEISNIEGHDFESERKCESRWWKELSVLTRRSFVNMSRDLGYYWIRITTYIALSLCVGIIFYDVGTSYRAIFARGSCAGFISGFMTFMSIGSFPSFLEEMKVFYKERMGGYYGVGVYILSNFLSSFPFLAVMSTATGAISYYMVKASSEFSHFLYITLDLLGCIAVVESSMMVIASLVPNFLMGLTIGAGYIGLMMMTSGFFRPLPDIPKFFWRYPISYINYGAWGLQGAFKNDLIGMEFDPLEPGDPKLKGEFILKTMLGVRVDNSKWWDIAAIMIILILLRVLFFFILKFKERAAPFLYSIYARQTLQRIKKRPSFRKGPSFPSKRHQSLHPLSPQEDLNSLIH* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0221 681 CDD ABCG_EPDR 27 256 - -
Vra2g0221 681 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Vra2g0221 681 SMART AAA_5 60 250 IPR003593 -
Vra2g0221 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 266 IPR027417 -
Vra2g0221 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 25 674 - -
Vra2g0221 681 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524
Vra2g0221 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 274 IPR003439 GO:0005524
Vra2g0221 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 25 674 - -
Vra2g0221 681 MobiDBLite consensus disorder prediction 664 681 - -
Vra2g0221 681 MobiDBLite consensus disorder prediction 650 681 - -
Vra2g0221 681 Pfam ABC-2 type transporter 231 290 IPR043926 GO:0140359
Vra2g0221 681 Pfam ABC-2 type transporter 360 568 IPR013525 GO:0016020|GO:0140359
Vra2g0221 681 Gene3D - 18 269 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0221 Vra-Chr2 1657727 1664736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0221 49 245 Calmodulin-binding Proteins AT2G36910 28.440 5.96e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0221 K05681 - gmx:100806806 1132.47