Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0198 ATGGGTCAAACTTTTCGGAAGCTCTTCGATACATTCTTCGCCAATACTGAGATGCGGGTTGTCATGCTTGGTCTTGATGCTGCCGGCAAAACTACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATTGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACAGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGACACTTTGGAGGCACTATTTCAACAACACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGTGAAAGGCTAGGGAAAGCTAAGCAGGAATTTCAGGCAGTCATAAATGATCCGTTTATGCTCCACAGTGTAATATTGGTGCTTGCTAACAAACAGGACCTGAGAGGAGCAATGTCACCAAGGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAGTGGCACATACAGGGCACTTGTGCTCTTCGGGGAGATGGCCTTTATGAGGGCTTGGATTGGCTGTCCACAACTCTGAAGGAGAGAAAAGCTGCCGGATATTCTTCAATAGGACTAGGAACTTCATCCATCTAA 588 0.4303 MGQTFRKLFDTFFANTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERLGKAKQEFQAVINDPFMLHSVILVLANKQDLRGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSTTLKERKAAGYSSIGLGTSSI* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0198 195 SMART rab_sub_5 18 180 - -
Vra2g0198 195 TIGRFAM small_GTP: small GTP-binding protein domain 16 138 IPR005225 GO:0005525
Vra2g0198 195 Pfam ADP-ribosylation factor family 7 176 IPR006689 GO:0003924|GO:0005525
Vra2g0198 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Vra2g0198 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 189 IPR024156 GO:0005525
Vra2g0198 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Vra2g0198 195 PANTHER ADP-RIBOSYLATION FACTOR B1C 1 189 - -
Vra2g0198 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Vra2g0198 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Vra2g0198 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Vra2g0198 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Vra2g0198 195 SMART arf_sub_2 1 181 - -
Vra2g0198 195 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
Vra2g0198 195 Gene3D - 3 187 IPR027417 -
Vra2g0198 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0198 Vra-Chr2 1503884 1507234 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0198 K07937 - gmx:100816276 382.489