Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0195 ATGGCATCCGACCCTGAGCAACCCTCTTTTGCAAAGGAAGGAAGTTCGTTTGGTGAGGTTGGGAGTGCAAGGGAGCCTTTGCTTGTAGGGGTTCATGACTCCGAGAGCTACTCTGTCTCTGCTGCAATTCTTCCGTTTCTCTTCCCAGCATTTGGTGGCCTACTATATGGCTATGATATTGGTGCCACATCTTGTGCAACCATTTCCATCGAGTCATCGACGCTAAGTGGAATATCTTGGTACAACTTGTCCTCCGTTGAAATTGGTCTTCTTACTAGTGGATCGTTATATGGCGCCTTAATAGGCTCAGTGTTGGCCTTCAATGTTGCTGACTTCTTAGGAAGAAGAAGGGAGCTCATTTTAGCTGCATTACTATATTTTGTTGGAGCTCTTGTAACAACATTTGCTCCTGATTTTCCTGTGTTGGTGCTTGGGCGACTTATATATGGCATTGGAATTGGGCTGGCAATGCATGCTGCTCCAATGTACATTGCAGAGACAGCTCCAACACCAATACGTGGACAACTAATATCTCTAAAAGAGTTTTTTATAGTACTTGGGATGCTGGCAGGATATGTAATTGGTAGCTTGTTTGTAGTTACTGTAGCTGGATGGCGGTATATGTATGGAGTTAGTAGTCCTATAGCCATCATCATGGGACTTGGAATGTGGTGGCTACCAGCTTCTCCTAGATGGTTACTTTTGCGTGCTATACAGGGAAAAGGAGATGTTCAGAATTCGAAAGAAATAGCAATTCGTAGTTTGTGCCAGCTTCGAGGTCAGGCTAGTGGTGATTCAGCTCATGGCCAAGTTGATGAGATTCTTGCAGAACTTTCTTATATAGGAAGAGAAAAGGAAGCTACCTTCGGAGAATTATTCCAAGGAAAATGCTTGAAAGCCCTTTGGATTGGTGCAGGACTGGTCTTGTTTCAGCAGATCACAGGGCAGCCAAGTGTGCTCTACTATGCTGCATCAATCTTTCAGAGTGCAGGGTTTTCCGGAGCATCTGATGCAACCCGAGTCTCTATTCTCCTTGGGGCTTTTAAGTTGATTATGACCGGAGTGGCAGTTCTCATTGTTGATAAACTTGGAAGGAGGCCTTTACTTCTGGGAGGAGTTTCAGGAATAGTGATCTCTTTATTCCTTATGGGTTCATACTACGTTTTCTTGGATAACTCACCAGTTATTGCTGTAGTTGGTCTGCTGTTGTACGTAGGCTGTTACCAGATTTCCTTTGGTCCAATTGGTTGGCTCATGATAGCAGAGATTTTCCCCTTACGCCTAAGAGGTCGAGGACTTGGTATAGCAGTACTCGTCAATTTTGGTGCAAATGCCCTAGTCACATTTGCTTTTTCACCACTTGAGGAATTACTGGGAGCAGGAATCTTGTTCTACATCTTTTGTGTAATAGCCGTGGCATCCCTTGCATTCATATACTTTGTTGTACCAGAAACAAAGGGGCTTACTCTGGAGGAGATAGAAGCCAAATGCCTCTAA 1497 0.4429 MASDPEQPSFAKEGSSFGEVGSAREPLLVGVHDSESYSVSAAILPFLFPAFGGLLYGYDIGATSCATISIESSTLSGISWYNLSSVEIGLLTSGSLYGALIGSVLAFNVADFLGRRRELILAALLYFVGALVTTFAPDFPVLVLGRLIYGIGIGLAMHAAPMYIAETAPTPIRGQLISLKEFFIVLGMLAGYVIGSLFVVTVAGWRYMYGVSSPIAIIMGLGMWWLPASPRWLLLRAIQGKGDVQNSKEIAIRSLCQLRGQASGDSAHGQVDEILAELSYIGREKEATFGELFQGKCLKALWIGAGLVLFQQITGQPSVLYYAASIFQSAGFSGASDATRVSILLGAFKLIMTGVAVLIVDKLGRRPLLLGGVSGIVISLFLMGSYYVFLDNSPVIAVVGLLLYVGCYQISFGPIGWLMIAEIFPLRLRGRGLGIAVLVNFGANALVTFAFSPLEELLGAGILFYIFCVIAVASLAFIYFVVPETKGLTLEEIEAKCL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0195 498 ProSitePatterns Sugar transport proteins signature 1. 106 123 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0195 498 ProSitePatterns Sugar transport proteins signature 2. 148 173 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0195 498 Gene3D MFS general substrate transporter like domains 36 496 IPR036259 -
Vra2g0195 498 TIGRFAM SP: MFS transporter, sugar porter (SP) family 34 493 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0195 498 PRINTS Sugar transporter signature 53 63 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0195 498 PRINTS Sugar transporter signature 143 162 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0195 498 PRINTS Sugar transporter signature 311 321 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0195 498 PRINTS Sugar transporter signature 398 419 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0195 498 PRINTS Sugar transporter signature 421 433 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0195 498 Pfam Sugar (and other) transporter 48 495 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra2g0195 498 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 15 498 - -
Vra2g0195 498 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 15 498 - -
Vra2g0195 498 CDD MFS_GLUT10_12_Class3_like 48 493 - -
Vra2g0195 498 SUPERFAMILY MFS general substrate transporter 46 494 IPR036259 -
Vra2g0195 498 ProSitePatterns Sugar transport proteins signature 1. 356 372 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0195 498 ProSiteProfiles Major facilitator superfamily (MFS) profile. 45 486 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0195 Vra-Chr2 1456993 1468404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0195 1 498 Organic Solute Cotransporters AT5G17010 74.950 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0195 - - gmx:100801856 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0195 2 1456993 1468404 Vra2g0195 2 1456993 1468404 ECH