Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0186 ATGAGTGAAAATCTGATGGGAAGAGTGAACGCTTTGGGGGAGCGTCTGAAGATTGGAGGAGCTGAGGTGGGTCGGAAGATGAGTGCTGGAATGAGTTCTGTAAGCTTCAAAGTGAAAGAGTTCTTCCAGGATTCAAGCCATGCTGATAAACTCGTTGGGGAAGCTACATCTGAGACCCTTCCTCACCCTCACTGGCCCATCATTCTTCATCTGTGTGACTTGATAAATGGTGATCAGCTTAACACTGCTGAAGCGGTTCGTGCAATAAAGAAAAGGGTTGCTTCCAAGAGTCACAGAACTCAATATCTGGCTCTGGTTCTGCTTGAAGCACTGGTCAAGAACTGTGACAAGGCTTTCTTGGAGGTGGCAACCGAGAGAGTCCTTGATGAGATGGTCAAGCTCGTTGATGACCCTTATACTTTTGTTAATAACAGGAACAAGGCTTTGATGATGATTGAAGCTTGGGGAGAGTCAACCGCTGAACTGCGCTATCTTCCTGTCTATGCACAAACTTTCAAGAGTTTGAAATCAAGGGGTATTCTATTCCCCAGTCGTGACAACGAAAGTTTGGCTCCTATTTTCACTCCACCTCGTTCTGACACTGCTCCAGCGGCAGATGTCAATCTTGAACATCTTATGCAGCATAACGTACGAAGTTTTTCGCCTGTTACTCCTTCTCGTTCAGAGGCTGATGTCAATCTTGCACATCTTATGCACCATGACGTTCATGTCAAAAGCTTTACTTCTCAACAAACAGAGGAAGCTTTTGATGTTGCGAGAAACAGCTTCGAGCTTCTTTCTACCGTGTTATCTTCTTCAATGCAGAAGGATGTTCTAAAGGATGATTTGGTTACGACATTAGTACAACAGTGCCGACAGTCCCAGACTACTGTCCATAGAATCATTGAGACATCATGGGATAATGAAGCACTGCTTTGTGAGGCCTTGAATATAAATGATGAGATCGAGAAGGTTGTGAAGAGATATGAAGAAATGAAGAAGAAGAAGAAGCATGCAGTTGTTGCTCTTGAACCTGAAACTGCCATAGAAGCTTACGAGGCACCCCATTTTACAGAAGAGGAAGCTCTGGTTAGAAAGAGTGGAAGTTCAAGAAGTGAAGTTCAGAGAGGGAACCAGGATGACATGTTGGATGATCTTGATGAGATGATATTTGGGAAAAGGGGTGGTTTTGATGGAGGACAACATCCAAACAAACAACGTTCATCAACAAAAGATGATCTCATCTCCTTCTGA 1254 0.4394 MSENLMGRVNALGERLKIGGAEVGRKMSAGMSSVSFKVKEFFQDSSHADKLVGEATSETLPHPHWPIILHLCDLINGDQLNTAEAVRAIKKRVASKSHRTQYLALVLLEALVKNCDKAFLEVATERVLDEMVKLVDDPYTFVNNRNKALMMIEAWGESTAELRYLPVYAQTFKSLKSRGILFPSRDNESLAPIFTPPRSDTAPAADVNLEHLMQHNVRSFSPVTPSRSEADVNLAHLMHHDVHVKSFTSQQTEEAFDVARNSFELLSTVLSSSMQKDVLKDDLVTTLVQQCRQSQTTVHRIIETSWDNEALLCEALNINDEIEKVVKRYEEMKKKKKHAVVALEPETAIEAYEAPHFTEEEALVRKSGSSRSEVQRGNQDDMLDDLDEMIFGKRGGFDGGQHPNKQRSSTKDDLISF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0186 417 ProSiteProfiles GAT domain profile. 247 334 IPR004152 GO:0035091|GO:0043130
Vra2g0186 417 Gene3D - 39 201 IPR008942 -
Vra2g0186 417 PANTHER TOM1-LIKE PROTEIN 1 1 417 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vra2g0186 417 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Vra2g0186 417 PIRSF TOM1 32 413 IPR014645 -
Vra2g0186 417 Pfam GAT domain 260 334 IPR004152 GO:0035091|GO:0043130
Vra2g0186 417 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Vra2g0186 417 MobiDBLite consensus disorder prediction 363 382 - -
Vra2g0186 417 MobiDBLite consensus disorder prediction 392 417 - -
Vra2g0186 417 CDD VHS 48 177 - -
Vra2g0186 417 Coils Coil 315 339 - -
Vra2g0186 417 Gene3D - 233 336 IPR038425 -
Vra2g0186 417 Pfam VHS domain 46 179 IPR002014 GO:0035091|GO:0043130
Vra2g0186 417 PANTHER TOM1-LIKE PROTEIN 1 1 417 - -
Vra2g0186 417 SUPERFAMILY ENTH/VHS domain 44 183 IPR008942 -
Vra2g0186 417 SUPERFAMILY GAT-like domain 182 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0186 Vra-Chr2 1409697 1411567 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0186 - - gmx:100784925 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0186 2 1409697 1411567 Vra2g0186 2 1409697 1411567 ECH