Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0180 ATGGCTTCAAAATCTAGACCCAATCTATCTGAAAATCCCAGCAAAGGATCAATGGGAACTACTAGAATCAGTAAAGCTAGCAAAGTAGTGTCCAAATCAGAATCCGAGTCACAATCCCCCTTGCAAAATTCGCGACTTTCTGTGGAACGATCTCCGCGATCTGTTAATTCAAAGCCAACGATTGAACGCAAATCACCAAGACCTTCCGCCACCCCACCTGATAAACAACCCCCTAGAGCTGCAAAGGGTTCAGAGTTGTTGCAGAACCAATTGAATCTTGCTCAAGAAGACCTAAAGAAAGCAAAGGAGCTGCTCATTCAGGCTGAGAAGGAGAAGCTAAAAGCAATTGATGAGTTGAAAGAAGCACAGAGGGTGGCTGAGGAAGCAAATGACAAACTCAGGGAAGCATTGGTGGCTCAAAAACGCGCCGAGGAAAATTCTGAGATTGAGAGGTTCCGAGCTGTGGAATTGGAGCAGGCCGGTATTGAAACTGTGAAGAAGAAGGAAGAAGAATGGAAGAAGGAGATTGAAAGTGTAAGGAGCCAACATGCTTTGGACATGGCTGCTCTTCTCTCCACCACGCAGGAGCTTCAGCGGGTTAAACAAGAACTTGCCATGACTTGTGATGCAAAGAACCAGGCATTGAATCATGCCGATGATGCAACTAAAATTGCCGAGATTCAGGCAGAGAAAGCAGAGTTTTTATCAGCTGAATTGTTGCGATTGAAGGCCTTACTAGATGCAAAACTGGAAACGGAGGCTGGAGAAAATCAGGTTATATTGAAACTGAAAACCGAGATAGAGGCTCTCAATGAAGAACTTGAAAAAGCAAAGGGTTACGCTGATAAGTTGTCAGAGAAAGAAGCTTTTATTGAACAGCTTAATGTGGAGCTTGAAGCTTCTAAAATGGCGGAGTCTTATTCCCGTAGCCTGCTAGAGGAGTGGCATAAGAAGGTTGAGGAACTGGAAATGAGAATTGAAGAAGCAAACAGACTGGAGAGATCTGCATCAGAGTCTTTGGAATCTGTAATGAAACAGCTAGAAGGAAGCAATGATTTGTTGCATGAAGCAGAATCTGAAGTTACAACTCTTAAAGAGAAGGTGGGGTTATTAGAAATGACAATTGGGAGACACAGAGCTGATGTTGAGGATTCAGAACGTCAACTTCGTACAGCCAAGGAAGAAAGTCTTGAGAAGTCAAAGGAAGTTGAGTCTCTGAAATCTGAAATTGAGAAGGTTAAGGAAGAGAAAGCTCAAGCTTTGAACGATGAAAAACTTGCCGCTTCTAGTGTGCAGACCTTATTAGAAGAGAAAAACAAACTTATCAGTGAGTTGGAAAATTCTAGAGATGAAGAAGAAAAGAGCAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTATCTGCAGAAGCCAGAGAAGCCAAGGAAAATCTACTAAACATCCAAGCTGAACGCGAAAGCTATGAGGCTCAGATTGAAGATTTGAAGTTAGTATTAAAAGCCACTAATGAAAAATATGAGTCCATGCTAGATGAGGCACGACATGAGATCGATGTTCTTGTATGTAGCATTGAAAATTCAAAGAGTGTCTTTGAGAACTCCAAGGTTGAGTGGGAGCAAAGAGAGCATCATCTTGTAAGCTGCATAAAGAAAAATGAAGAAGAGAAGGTATCTCTGGAAAAAGAAATAAAAAGATTGCTTTATTTGCTTAAAGAAACCGAGGAAGAAGCTAATATAAACAGGGAGGAAGAAGCCCAGTTGAAGGAAAATCTGAAGGAAGTTGAGGCTGAGGCAATTCAACTGCAGGAAACTCTTAAGGAAGCAACAGCTGAGAACATGAAATTGAAGGAGAATTTATTGGATAAAGAAAACGAGTTGCAGAGTATGTTTGAAGAAAATGATGAACTTCGGATGAGGGAATCTGAATCAATGAAGAAGGTGGAGGAGTTATCTAAGTTGTTGGAAGAAGCTACAACCATAAACCACACTGAGGAAAACGGGGATCTTACAGACAGTGAGAAAGACTATGATTTGCTTCCTAAAGTAGTTGAATTTTCTGATGAGAATGGACATGTAGGAGATGACATTTCAAAGGTAGAGCTCTCAGAGAATCAGGAGGAACTCAAACAAAACATACCAGAAGAAAGCATAGACAAGGCTGAAAACATTGCATCTCCGAAACCTGAGGAAGTAGAGAGTGAAAAAGTGAAGGAAGAAGATGAGAGGAAAGAAAAGGAGGATTCAGTAGAAGTTGAATTTAAAATGTGGGAGAGCTGCAAGATAGAGAAAAAGGAGTTCTCTCCAGAGAGAGAAGCAGAGCCTGAATCATTTGAAGATGAAGTTGACTCAAGGGTAGAAGAAGGTGGTGAGAGTTTTGATAAGATAAATGGAAATACAGTGACAGAGAACATTGATGAAGGTTTGACAGAGAACATGGAAATTCAGTTAAAACAACAATCAAAGAAGAAGAAAAAGCCTTTACTTGGAAAGTTTGGAAGCCTGTTAAAGAAAAAGGGTGGTGCCAACCAGAAATAG 2541 0.4089 MASKSRPNLSENPSKGSMGTTRISKASKVVSKSESESQSPLQNSRLSVERSPRSVNSKPTIERKSPRPSATPPDKQPPRAAKGSELLQNQLNLAQEDLKKAKELLIQAEKEKLKAIDELKEAQRVAEEANDKLREALVAQKRAEENSEIERFRAVELEQAGIETVKKKEEEWKKEIESVRSQHALDMAALLSTTQELQRVKQELAMTCDAKNQALNHADDATKIAEIQAEKAEFLSAELLRLKALLDAKLETEAGENQVILKLKTEIEALNEELEKAKGYADKLSEKEAFIEQLNVELEASKMAESYSRSLLEEWHKKVEELEMRIEEANRLERSASESLESVMKQLEGSNDLLHEAESEVTTLKEKVGLLEMTIGRHRADVEDSERQLRTAKEESLEKSKEVESLKSEIEKVKEEKAQALNDEKLAASSVQTLLEEKNKLISELENSRDEEEKSKKAMESLASALHEVSAEAREAKENLLNIQAERESYEAQIEDLKLVLKATNEKYESMLDEARHEIDVLVCSIENSKSVFENSKVEWEQREHHLVSCIKKNEEEKVSLEKEIKRLLYLLKETEEEANINREEEAQLKENLKEVEAEAIQLQETLKEATAENMKLKENLLDKENELQSMFEENDELRMRESESMKKVEELSKLLEEATTINHTEENGDLTDSEKDYDLLPKVVEFSDENGHVGDDISKVELSENQEELKQNIPEESIDKAENIASPKPEEVESEKVKEEDERKEKEDSVEVEFKMWESCKIEKKEFSPEREAEPESFEDEVDSRVEEGGESFDKINGNTVTENIDEGLTENMEIQLKQQSKKKKKPLLGKFGSLLKKKGGANQK* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0180 846 Coils Coil 162 182 - -
Vra2g0180 846 Coils Coil 428 518 - -
Vra2g0180 846 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 11 844 - -
Vra2g0180 846 Coils Coil 84 146 - -
Vra2g0180 846 MobiDBLite consensus disorder prediction 711 751 - -
Vra2g0180 846 Pfam Weak chloroplast movement under blue light 85 368 IPR008545 -
Vra2g0180 846 Coils Coil 551 641 - -
Vra2g0180 846 MobiDBLite consensus disorder prediction 765 800 - -
Vra2g0180 846 MobiDBLite consensus disorder prediction 380 408 - -
Vra2g0180 846 MobiDBLite consensus disorder prediction 1 64 - -
Vra2g0180 846 MobiDBLite consensus disorder prediction 1 91 - -
Vra2g0180 846 Coils Coil 260 287 - -
Vra2g0180 846 MobiDBLite consensus disorder prediction 774 788 - -
Vra2g0180 846 Coils Coil 312 423 - -
Vra2g0180 846 MobiDBLite consensus disorder prediction 819 846 - -
Vra2g0180 846 PANTHER WEB FAMILY PROTEIN-RELATED 11 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0180 Vra-Chr2 1378119 1381964 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0180 - - gmx:100777446 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0180 2 1378119 1381964 Vra2g0180 2 1378119 1381964 ECH