Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0172 ATGAATTTCAAAAACGTGAATGTCCCTAAGGTTCCTGGTGGCGGAATCGCTGCTTTGCTGAAAGCTAGCATCATCGGTGGGATTGCTGTGTATGGGGCTGCAAACAGTTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTGTTCAATCGCATACTTGGTGTCAAAGATCAGGTCTATCCTGAAGGGACACATGTTATGATTCCTTGGTTTGAGAGGCCTGTGATCTATGACGTTCGTGCACGACCTCATTTAGTAGAGAGTACTTCAGGGAGCCGTGATCTTCAAATGGTGAAAATTGGACTTAGAGTCCTAACACGCCCTGTTCCAGACCAATTGCCGACAATTTATCGAACCCTGGGTGAGAATTATAATGAAAGGGTGTTGCCTTCTATTATACATGAAACTCTCAAAGCTGTAGTTGCACAGTACAATGCCAGTCAGCTCATTACTCAGAGAGAGACCGTCAGTCGAGAAATAAGGAGGATATTGACTGAGAGGGCCTCCCATTTTAACATTGCTTTGGATGATGTGTCAATCACAAGTTTGTCATTTGGGAAGGAATTTACAGCTGCCATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTTGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGGGTGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCTATAGCCAACAATCCTGCATTTATAACCTTAAGGAAAATTGAAGCTGCAAGGGAAATTGCTCAAACGATTTCAAATTCTGCCAACAAGGTTTTCTTGAATTCAGATGATCTCTTACTCAATCTCCAGGAGTTCAATTTGGAGGCCAGTGGGAAGAAGAGATAG 873 0.4341 MNFKNVNVPKVPGGGIAALLKASIIGGIAVYGAANSLYNVEGGHRAIVFNRILGVKDQVYPEGTHVMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRRILTERASHFNIALDDVSITSLSFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNPAFITLRKIEAAREIAQTISNSANKVFLNSDDLLLNLQEFNLEASGKKR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0172 290 PANTHER PROHIBITIN-1, MITOCHONDRIAL-LIKE 1 289 - -
Vra2g0172 290 CDD SPFH_prohibitin 37 231 IPR000163 GO:0016020
Vra2g0172 290 Coils Coil 196 216 - -
Vra2g0172 290 SUPERFAMILY Band 7/SPFH domain 68 204 IPR036013 -
Vra2g0172 290 PRINTS Prohibitin signature 80 96 IPR000163 GO:0016020
Vra2g0172 290 PRINTS Prohibitin signature 98 117 IPR000163 GO:0016020
Vra2g0172 290 PRINTS Prohibitin signature 121 139 IPR000163 GO:0016020
Vra2g0172 290 PRINTS Prohibitin signature 144 160 IPR000163 GO:0016020
Vra2g0172 290 PRINTS Prohibitin signature 167 186 IPR000163 GO:0016020
Vra2g0172 290 PRINTS Prohibitin signature 192 215 IPR000163 GO:0016020
Vra2g0172 290 PRINTS Prohibitin signature 215 231 IPR000163 GO:0016020
Vra2g0172 290 Gene3D Band 7 domain 65 199 IPR036013 -
Vra2g0172 290 SMART PHB_4 36 197 IPR001107 -
Vra2g0172 290 Pfam SPFH domain / Band 7 family 39 214 IPR001107 -
Vra2g0172 290 PANTHER PROHIBITIN 1 289 IPR000163 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0172 Vra-Chr2 1327728 1331370 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0172 K17081 - gmx:100811958 524.242