Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0165 ATGGGAGTTGCTGGATTTGAAATTAGTGGGAATTCTGCTTCTGCTTCTGTTTTGCATTTTGGTGCCAATTCGTTATCTTCCTATAAGGTTCCTATTTCTTTGAGACCCTTTTTTGGGAATGCTCTGAACGCGAGGTTTACGGGGAAAATTCGGGTTTCTCAGACTCAGAAGCCGAATTTCGGTGCAGTTTCTGCTTCACTGAATGATGGCACTAATGTTGGGTTGATTAGTGATGCGATTCTGCCGAAGGACTCAGAATTTAAGCCTTCCTTTGACGAATATTTGAAGGCTATGGAATCTGCCAGAACTGAGAGGGGCAAGAAGCGTGCTGCCACTGCTAGAAAACAAAAGACGGCGGAAAAGGGTGACAATAGCACCGTAAAAGTTAGCAGTGCGAGAGTGAAAATTGAGAGAAAAGATGGGCATGAAGGTGCTGAAGAAGGTTCCTCCAGAAGTAGTGGCAAGGTCAGAAGATCAGCTACTAAAGGATTTAGAAGTGAACACGAAGGGAAAGAAAATGGCTTTGATGTAAAGGGAAAGCAGAAAAATGGGTCGTTGAAGCGCCAGAGTCATAGTTTAGAATCAAAGTCTAAGAGTATAGTTAGGTCTAGTTTGAATGGTAGCCGTGGGAATGTCATGAAGAGGGAAGTTATTCATGATTTATATTCTTCAAAGATTGTGGGAGAGAAGGTTGTTGGTAGCAGACAAAGGGATTATAACACACAGGGTAAAATCCCTGATAGAGGTCTAGCACAAAATGCTCAAGACAAAGGGATTGTAAGAAGACACACCGAGAATGGAAGTTTTATGAATAGAAATGGTCTGTCTAATGTGAAAATGAATGGAGGCCGCAAGCGTTTCATTGACAGGGGTTATGATTCTGATATTTCGGAGGTAGAACGAGCAGCATTTGAGAATCTGGAAGACCCGAACCAGGTTATCAGAAAGTCACAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATTCGTTAAATGGTGCAGACATCAATTTACCTGAATGGATATTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTTCTGACTATTCCATATCAAGGATTATCACAATCTTGGGAAAACTAGGAAACTGGCAGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCAGTAAGCTAAGGAATATATATACTGCTGCTCTATTTGCACTTGGAAAGTCCAGGAGACCTGTTGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCATATCCTGATTTAGTAGCTTATCGGAGCATTGCTGTGACTCTTGGACAAGCAGGGCATATGAAGGAGCTCTTTGATGTGATTGATATTATGCGATCACCACCAAAGAAAAAGTTTAAAACAGGGGTATTTAAGAGCTGGGACCCAAGGCTGGAACCAGATACTGTAGTCTATCATGCAGTGCTTAACGCTTGTGTTAAGCAGAAACAATGGGAAGGAGCCTTTTGGGTTCTGCAGCAGTTAAAGAAGCAAGGACAACAACCTTCTGCCACAACTTACGGCCTAGTCATGGAGGTGATGCTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTCCGTTCCTAATTCATTGACGTATAGAGTTCTTGTAAATACACTGTGGAAAGAGGGAAAAAGCGATGAGGCTATATTGGCTGTCCAAGAAATGGAAAATCGTGGAATTGTAGGCTCGGCTTCCCTTTATTATGATCTGGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGTTTGATGCAAGCAAGTCTAGACTCTGGAAATATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAACCTGGTTACATATAACATATTGCTGAAAGCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCAAATTGTCTGAGGGGAAATACTGATTACAAGATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGAGATGGGATTATTTTGATCATGTCTATCAAAAGATGTTGTACCATGGTTATCACTTCAATCCAAAACGTCATCTTCAAATGATATTGGATGCTTCAAGAGCGGGAAAGGAACGGCCGTTGGAGATAACATGGAAACACTTAACCGACATGGATCGAAATATTCCAACTTCTCTGATCAAGGAGAGGTTTTGTTCTAAGCTTGAGAGAGAAGACTATGTTGCTGCTCTCACATGTATGACCAACAATCTCCCAAAAGACTCGCAGCCATTTTCCAAATCGTCTTGGTTGAAACTATTAAAGAATAATTCTCACCGGTTTCAGAAGGATACTATTGTTAGAGTAATGAACGAGGCCAGCAAAATGGTTTCCAATGGAAGTTTACCAAATCCAACACTTGAGTATTTGATACAATCATGTAAAAAAATTCTTTTTGCCACTGAAATCAGTGAAGTTGACATGGATTCAATGAAAAATGTAGTTGAAGTTGAAGTAGAGAATAAGCTGGTCATGGCCAACTTTAGATGA 2679 0.4076 MGVAGFEISGNSASASVLHFGANSLSSYKVPISLRPFFGNALNARFTGKIRVSQTQKPNFGAVSASLNDGTNVGLISDAILPKDSEFKPSFDEYLKAMESARTERGKKRAATARKQKTAEKGDNSTVKVSSARVKIERKDGHEGAEEGSSRSSGKVRRSATKGFRSEHEGKENGFDVKGKQKNGSLKRQSHSLESKSKSIVRSSLNGSRGNVMKREVIHDLYSSKIVGEKVVGSRQRDYNTQGKIPDRGLAQNAQDKGIVRRHTENGSFMNRNGLSNVKMNGGRKRFIDRGYDSDISEVERAAFENLEDPNQVIRKSQFSHKEMEEKIQKLANSLNGADINLPEWIFSKMIRSARLKFSDYSISRIITILGKLGNWQRVIQVIEWLQKRERFKSSKLRNIYTAALFALGKSRRPVEALNIFHAMQQQMSSYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGVFKSWDPRLEPDTVVYHAVLNACVKQKQWEGAFWVLQQLKKQGQQPSATTYGLVMEVMLSCGKYNLVHEFFRKLQKSSVPNSLTYRVLVNTLWKEGKSDEAILAVQEMENRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEVCAPNLVTYNILLKAYLEHGMFQEAKALFEQMSENANCLRGNTDYKMLVVPDTYTFNTMLDACVSEQRWDYFDHVYQKMLYHGYHFNPKRHLQMILDASRAGKERPLEITWKHLTDMDRNIPTSLIKERFCSKLEREDYVAALTCMTNNLPKDSQPFSKSSWLKLLKNNSHRFQKDTIVRVMNEASKMVSNGSLPNPTLEYLIQSCKKILFATEISEVDMDSMKNVVEVEVENKLVMANFR* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0165 892 SUPERFAMILY TPR-like 492 684 IPR011990 GO:0005515
Vra2g0165 892 MobiDBLite consensus disorder prediction 101 206 - -
Vra2g0165 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Vra2g0165 892 Pfam PPR repeat family 482 526 IPR002885 -
Vra2g0165 892 PANTHER OS01G0674700 PROTEIN 23 869 - -
Vra2g0165 892 MobiDBLite consensus disorder prediction 132 153 - -
Vra2g0165 892 Pfam PPR repeat 401 426 IPR002885 -
Vra2g0165 892 Pfam PPR repeat 555 584 IPR002885 -
Vra2g0165 892 Pfam PPR repeat 705 734 IPR002885 -
Vra2g0165 892 Gene3D Tetratricopeptide repeat domain 321 470 IPR011990 GO:0005515
Vra2g0165 892 Gene3D Tetratricopeptide repeat domain 471 570 IPR011990 GO:0005515
Vra2g0165 892 Gene3D Tetratricopeptide repeat domain 601 788 IPR011990 GO:0005515
Vra2g0165 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Vra2g0165 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Vra2g0165 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 686 IPR002885 -
Vra2g0165 892 PANTHER OS01G0674700 PROTEIN 23 869 IPR044645 GO:0009658
Vra2g0165 892 TIGRFAM PPR: pentatricopeptide repeat domain 485 518 IPR002885 -
Vra2g0165 892 TIGRFAM PPR: pentatricopeptide repeat domain 705 731 IPR002885 -
Vra2g0165 892 TIGRFAM PPR: pentatricopeptide repeat domain 658 686 IPR002885 -
Vra2g0165 892 Pfam Pentatricopeptide repeat domain 622 667 IPR002885 -
Vra2g0165 892 Coils Coil 321 341 - -
Vra2g0165 892 MobiDBLite consensus disorder prediction 160 195 - -
Vra2g0165 892 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0165 Vra-Chr2 1265871 1273119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0165 503 753 Glycosyltransferase AT1G05670 20.392 4.22e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0165 - - gmx:100787028 1324.3