Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0152 ATGGCTAGTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTTTTGGGTTCATTATACCATTACTCTGATATTATAGAAAAGCTTTCTTATGGAAGTGACTTTGGATCCACACAGTATCAGATTGTTTCAACAAAATCTGTGATAGTTGCCAAGAAGTCATCCAATTACACTCCAACTTTTCCAGCATCGAACCGGCAGAATCAGTCCATCAAGGCTCTTAAGGAGCATGTTGATGATGCTGCTACCGTTGCGGAGCCATGGTTTCAGAGTTCCAGTTCTAATGACTTAGAAGAGGAAAGCTCTGAAATGGGTTATTCTGTGGAAGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAGCCTTTCCTTTGAAAGGGAGGTGCTGACAGAACGTTATAGTAAAGCGAAAATCCGTAGGAAAGTGGCAGCGGTGACATGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATTAATGCCAAGCGGAAGACTGTGGTTAAAGCCTGTGGTGCTGTGCCGCTGAAGTCCAAAATCAGTCCAGAGCGGCTTCAAAACCGTGTGAAGGGTTATGTGAAAGGAGTAGTGAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTTAGCCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTAGAGGAGCATAAATCCAGACTGAAGGAGAGACTGGGATGTGAACCCTCTGACGATGAAATGGCAACTTCATTGAAGATGTCTCGTACTGAACTACGAGAAAAAATGCTAGAGTGCTCTCTAGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAGATATGAAAACGCTGGTGCAGATATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGCGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACCTACGTTTACTGGTGGATACGTCAGGGTGTTTCAAGAGCCTTAATTGAGAATTCAAGAACATTAAGATTGCCTGCTCACTTGCATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCATTGCTCCAACTATTGATAGGATTGCAAAACACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCCACTGAGGCAATCAGCAAAACTATCTCGCTTGATAGAGAAGCATTCCCCTCTTTGAATGGTCTACGAGGAGACACTCATCATAGTTACATTGCAGATAATCGCGTTGAGAACATCCCGTGGAAGGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATGAATGTGACCCTTAAGGAACGAGAGAGAGAAATTATCCGACTTTATTATGGACTGGGTAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATGGGTTTATCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGGGAGAATTGGAGGCAATGCTGTTGAAACATTGA 1515 0.4251 MASAAVIGLSGGKRLLGSLYHYSDIIEKLSYGSDFGSTQYQIVSTKSVIVAKKSSNYTPTFPASNRQNQSIKALKEHVDDAATVAEPWFQSSSSNDLEEESSEMGYSVEALLLLQKSMLEKQWSLSFEREVLTERYSKAKIRRKVAAVTCSGVSARQRRINAKRKTVVKACGAVPLKSKISPERLQNRVKGYVKGVVSEELLSHAEVVSLSEKIKVGLSLEEHKSRLKERLGCEPSDDEMATSLKMSRTELREKMLECSLAREKLAMSNVRLVMSIAQRYENAGADMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALIENSRTLRLPAHLHERLSLIRNAKFRLEERGIAPTIDRIAKHLNMSQKKVRNATEAISKTISLDREAFPSLNGLRGDTHHSYIADNRVENIPWKGVDEWALKDEVNKLMNVTLKEREREIIRLYYGLGKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGELEAMLLKH* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0152 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 421 494 IPR013324 -
Vra2g0152 504 Pfam Sigma-70 region 3 344 415 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 261 491 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 Pfam Sigma-70, region 4 441 490 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 Gene3D - 336 386 IPR036388 -
Vra2g0152 504 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 504 - -
Vra2g0152 504 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 504 - -
Vra2g0152 504 Gene3D RNA Polymerase Primary Sigma Factor 44 335 - -
Vra2g0152 504 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 187 335 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 Pfam Sigma-70 region 2 267 334 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 Gene3D - 420 498 IPR036388 -
Vra2g0152 504 CDD Sigma70_r4 431 489 - -
Vra2g0152 504 ProSitePatterns Sigma-70 factors family signature 1. 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 PRINTS Major sigma-70 factor signature 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 PRINTS Major sigma-70 factor signature 313 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 PRINTS Major sigma-70 factor signature 442 454 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 PRINTS Major sigma-70 factor signature 462 477 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 PRINTS Major sigma-70 factor signature 477 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra2g0152 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 337 393 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0152 Vra-Chr2 1178233 1183021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0152 K03086 - gmx:100801884 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0152 2 1178233 1183021 Vra2g0152 2 1178233 1183021 ECH