Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0139 ATGAATTCAAAATCCAAACTTTGGACAAACCCAACTTCAACATCAACCAGCTGTAGCAGTAGCAGCAGCAGCATCAGCAGCGAGAACGATGACAGCCCCTTTTGTTCCCAACGCATACCCATCGTTGTTTCTGCCTTCTTCAATTCTCACCGATCACTCGCTGTTCTCTCCGGACACGTGGGTTCCGTTTCGTGCTTGGCCCTGTGCGGTGAGTTCATCCTGAGTGCCTCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGACTTGAGGGTCTTTGCAAAGTTCGGACAAGGAGAGGGATCGGTGAAAGCACTTGCAACGGTTGGCAACAAGGTTTTCACCGCACATCAAGATAGCAGGATCAGAGTTTGGAAGGTGTCAAGAAGCTCGGAGAACGTGTTCAAGCTTGTCGATTCTCTTCCCACGACCAAGGACTATCTGGGAAAGTTCATGAAGCAGAGCAACTATGTCCAAACCCGGAGGCACCACAAACGTTTGTGGATTGAGCATGCAGATAGCATTTCTTGCTTGACGGTTTATAACGGGTTGATTTATTCTGGTTCGTGGGATAAGACTCTGAAGGTGTGGAAGCTCTCGGATTTGAAGTGTTTGGAGTCGATTAAGGCTCATGATGATGCAATCAATGGGCTGGTGGCGTGTAAAGGGGTGGTGTATTCTGCTTCTGCTGATGGAAAGATTAAAGCTTGGGGGAGAAAAGAGGGGAAGGGGGAGCATTGCTTGAAGGGGGTTTTGGAGGGTCATAAGGATGTTTCGTTCAATGCTATTGTTGTTTCTGAGGATGGGAAATGGGTTTATGGAGGAGGATCCGATGGGTTTGTGATGGGGTGGGAGGGGAGTGGAGGTTCTGAGAGTTGGAAGCTGGTTTCTGAAACCAAGGCACATGAGATGGCTGTGTTGTGCATGTGTCTGATGGGGGAGTTTTTGTGCAGTGGATCAGCAGATAAAAGCATAGGGATTTGGAGAAGAGAGGCTTTTGGCAAGCTTTGTAAAGTTGGTGTCATAAATGGCCATGAAGGGCCTGTGAAGTGTTTGCAAGCTTCATCATCTAGTAGGATTGGTGGTGGTTTTTTATTGTACAGCGGAAGCCTTGACAAAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATGATGCAGAGGTAGAGGACAATAGGTCTACACAATTTGGCACAGAGAATAAGTTCGTGCTAGCATAA 1218 0.4762 MNSKSKLWTNPTSTSTSCSSSSSSISSENDDSPFCSQRIPIVVSAFFNSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGQGEGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDSLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWKLSDLKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKEGKGEHCLKGVLEGHKDVSFNAIVVSEDGKWVYGGGSDGFVMGWEGSGGSESWKLVSETKAHEMAVLCMCLMGEFLCSGSADKSIGIWRREAFGKLCKVGVINGHEGPVKCLQASSSSRIGGGFLLYSGSLDKSVRVWWVPRYNDAEVEDNRSTQFGTENKFVLA* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0139 405 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g0139 405 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Vra2g0139 405 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Vra2g0139 405 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Vra2g0139 405 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 393 IPR045182 -
Vra2g0139 405 SMART WD40_4 292 329 IPR001680 GO:0005515
Vra2g0139 405 SMART WD40_4 201 238 IPR001680 GO:0005515
Vra2g0139 405 SMART WD40_4 49 86 IPR001680 GO:0005515
Vra2g0139 405 SMART WD40_4 161 198 IPR001680 GO:0005515
Vra2g0139 405 SMART WD40_4 335 379 IPR001680 GO:0005515
Vra2g0139 405 SMART WD40_4 89 126 IPR001680 GO:0005515
Vra2g0139 405 SMART WD40_4 245 285 IPR001680 GO:0005515
Vra2g0139 405 SUPERFAMILY WD40 repeat-like 50 382 IPR036322 GO:0005515
Vra2g0139 405 CDD WD40 52 378 - -
Vra2g0139 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 378 IPR001680 GO:0005515
Vra2g0139 405 Pfam WD domain, G-beta repeat 339 378 IPR001680 GO:0005515
Vra2g0139 405 Pfam WD domain, G-beta repeat 170 198 IPR001680 GO:0005515
Vra2g0139 405 Pfam WD domain, G-beta repeat 250 284 IPR001680 GO:0005515
Vra2g0139 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 207 IPR001680 GO:0005515
Vra2g0139 405 Gene3D - 146 402 IPR015943 GO:0005515
Vra2g0139 405 Gene3D - 7 145 IPR015943 GO:0005515
Vra2g0139 405 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vra2g0139 405 PANTHER OS01G0946100 PROTEIN 13 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0139 Vra-Chr2 1090982 1092623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0139 158 378 Miscellaneous Gene Families AT5G08390 24.891 3.56e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0139 - - gmx:100775295 697.197