Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0138 ATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCACTGCTGTCAAAGCAGTCTTCTGGGAAAAATGAAAAGCCTGTGGAGAAGAATCAGCTGCAGTTTGGATCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTGCAAAACTCATCAAAGGCATCAGTTAGTGCACCGCCCTCTGATTCTCAGAAATGTAATGGAGTGAAAAATGATAATGATAGTTCATCTGAAGTTCCAGGAGCAATTAATGAGAATGGCAGCATTACCAATTTCTCCCCTAGCCCCACGAGTACGAGTAGTGTGAATGAAGTTGACGAGAAAAATGCAAATTCTTTTACATTACTTGATGAAGATGGTCCCTCAAACAAGTTTTCAAAATTGAGCCTAGATGCTTCCGAGACTGAAAACTCGAGGAATGTACATAAAACTGGCAATGGAGATGATTCTTCATTAAAGTTCTCCCATCGAGAACCCGCAAAGGCACCTAACGGGCATGCTGTTCTGCCTGTTAAAGACATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTTTGCTTTCTTAATGCAACCGTGCAGGCCCTGTTGTCATGCTCACCTTTTGTTCATCTTTTACAGCAATTAAGAACTCGCAACCTTCCTAAGGTTGGATATCCTACATTGACAGCATTTGCTGAGTTCATAACCCAATTTGATATGCCAAGCAACACTAACATAAACAAGCAAGATACGGATATGTTTGAGTCTGGAAGGCCATTTTGCCCTGTTATGTTTGAAAGTGTTCTAAAAAATTTTACTCCAGATGTGCCAAATAGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTGAAGCTGGAAGGACAATCTTCAAGTCTTAATGGCACTCAATTTTCTCTTGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGGCCGAAGAATAAATCTGCTGTTACAAGGACTCAAAGCCTTCGCCCATCAGAATTAAGTAGTATTTTTGGAGGAGAGCTTAAAAGTTTGGTGAGAGCTAAAGGAAATAAGTCGGCCTTTGTTCAACCATATCTCTTACTCCATCTTGACATCTATCCTGAGACCGTACACACTATCGAGGATGCACTACGCTTGTTTTCTGCATCAGAAACTCTTGAAGGGTACCGGGTATCACCCACTGCAAAGGCTGGTGTGGTGACTGCAAGAAAATCTGTACAAATAGTGACGCTTCCTAAAATAATGATATTTCACCTGATGCGTTTTGGTTACGGAAGCCAGGGAAGCATCAAGTTGCATAAGGCCGTGCAGTTTCCTCTTGAGTTGGTATTGAGTCGTGATTTGCTTGTTTCACCATCTACTAAGGGTCGAAAGTATGAACTTGTTGCTACAATTACTCACCATGGAAGGGAGCCTTCGAAGGGGCACTACACAGCTGATGCCCAATACCCTAATGGTCGGTGGCTACGATTTGATGATGCATCTGTCTTTGCTATTGGAACAAATAAGGTGCTGCATGATCAAGCCTATGTCCTTTTCTACAGACAGCTGTGA 1590 0.4214 MLLFGSFTEDETRSLLSKQSSGKNEKPVEKNQLQFGSLNSVTVESNNLQNSSKASVSAPPSDSQKCNGVKNDNDSSSEVPGAINENGSITNFSPSPTSTSSVNEVDEKNANSFTLLDEDGPSNKFSKLSLDASETENSRNVHKTGNGDDSSLKFSHREPAKAPNGHAVLPVKDILPRGLINSGNLCFLNATVQALLSCSPFVHLLQQLRTRNLPKVGYPTLTAFAEFITQFDMPSNTNINKQDTDMFESGRPFCPVMFESVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGTQFSLVSSVEDDEWETVGPKNKSAVTRTQSLRPSELSSIFGGELKSLVRAKGNKSAFVQPYLLLHLDIYPETVHTIEDALRLFSASETLEGYRVSPTAKAGVVTARKSVQIVTLPKIMIFHLMRFGYGSQGSIKLHKAVQFPLELVLSRDLLVSPSTKGRKYELVATITHHGREPSKGHYTADAQYPNGRWLRFDDASVFAIGTNKVLHDQAYVLFYRQL* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0138 529 MobiDBLite consensus disorder prediction 1 104 - -
Vra2g0138 529 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 529 IPR028889 -
Vra2g0138 529 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 529 - -
Vra2g0138 529 Gene3D Cysteine proteinases 168 528 - -
Vra2g0138 529 Pfam Ubiquitin carboxyl-terminal hydrolase 178 526 IPR001394 GO:0004843|GO:0016579
Vra2g0138 529 MobiDBLite consensus disorder prediction 10 104 - -
Vra2g0138 529 MobiDBLite consensus disorder prediction 124 163 - -
Vra2g0138 529 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 471 489 IPR018200 GO:0004843|GO:0006511
Vra2g0138 529 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Vra2g0138 529 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 529 - -
Vra2g0138 529 SUPERFAMILY Cysteine proteinases 171 527 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0138 Vra-Chr2 1083856 1088677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0138 174 529 Miscellaneous Gene Families AT2G24640 28.493 2.77e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0138 K11841 - gmx:100799656 879.011