Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0128 ATGGATGGTTACGAAGCTACAAGAATTGTGTTTGCTAGGATCCAAAACCTGGACCCTGAAAATGCATCCAAAATCATGGGTGTACTTCTTCTTCAGGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCAGAAGCACTTGTTCACTCTGTGATTCTCAAAGCACGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCAACGCCCTCTACTCCTCCTTCTCCTTCGCCCTTCCTTTCGAGGCAAAGCTCCACTTCTTCCAGGCTTGGTGGTATCAACCTACCTCCTGCTCTCACCATTCCAAACCCTTCTTCCACTTCATCTTCTTGGCCTACTATGTCTGAGCTTCAAACCCCAGATGGTTTGATGAGTCCCAACCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTACCCTTTTATGTCAACGGAGGCTCAGATCCAATTGATGACTTTCAACTTCAGGATCAGCTGTCTTTCCTTAATGATGGTTCTCCCACTAGTACTGCTCTTGCTCACAAGAGCAACCCAGATTTGTTTTACCCAACTCACTCGGACATGTCCTCAAGTCCTACTGGTGTTGCTGACCCTGCTCTCTTTCCTTCCTACGGTTGGGGAGGGTCCCTTCATCGAAGGAGTTGCTCGGTCAATGATGCTTGTTTGGGTTCTGAGGACCCGAACTCCGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAGAATGGGACAAGTTGCAGGTTCCTTCATAGTGGACTTGGAGATGCAGATGGTGCTGCTGCAATGGTAGGGTCTCCAAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGATTGGCTGCTGCTTCTCAGCTCATGGGCTCTCCAACTTTTCCATACTCGCCTAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAACGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACATTTCCAGCAGACAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTTCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTGACCTTTGTTTATCCTGAGACTGTGAAGCTCATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCGGACAAGTACAGGAAGCAGCAGCAGGTAGACAGAGGAGATTTTTCACCATGTGGTACTCCTACCGGACTAGAGGCCAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAGGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAACATGTTCAATCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAGGCCCCAAATGAGAGTGGTTCATCTTCTGCTCCAGCTAGTACTACATCAGTTTCAGCTGGTCAGCAACCGGTCAACATATCTGTTGGCAAGGAAATGGTGGTCAACGGGGAGAATGGATATGATGAAGGCAATGGGAAGCAGAGCCCTAGTCATGAAGATCGTGAATTGCAAGAATGTTTGGAGCACAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAATGAGGCCATTGATGCTGATGCCTCAAGTGCATCTGCCAACTCTAAATTTGGTACTAGCGCATTACTTCCACCAGCTTCTGCTCTTGACATGGGAACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTAGTCATGGAACTATTGGGATGTTAGCAGGCACCGGTGGACCAATTGGCATTTAG 2127 0.4687 MDGYEATRIVFARIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLGGINLPPALTIPNPSSTSSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLPFYVNGGSDPIDDFQLQDQLSFLNDGSPTSTALAHKSNPDLFYPTHSDMSSSPTGVADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHSGLGDADGAAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMGSPTFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQVDRGDFSPCGTPTGLEARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVLPSFHTSSEAPNESGSSSAPASTTSVSAGQQPVNISVGKEMVVNGENGYDEGNGKQSPSHEDRELQECLEHNLPDSPFASPTKAAGDFMVSFSNGPNEAIDADASSASANSKFGTSALLPPASALDMGTFKSYNCQIPRFSSSHGTIGMLAGTGGPIGI* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0128 708 SMART rrm1_1 366 436 IPR000504 GO:0003723
Vra2g0128 708 Gene3D - 314 456 IPR012677 -
Vra2g0128 708 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
Vra2g0128 708 CDD RRM_AtC3H46_like 367 436 IPR034365 -
Vra2g0128 708 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 696 - -
Vra2g0128 708 Gene3D - 226 297 - -
Vra2g0128 708 SMART c3hfinal6 234 258 IPR000571 GO:0046872
Vra2g0128 708 MobiDBLite consensus disorder prediction 445 466 - -
Vra2g0128 708 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Vra2g0128 708 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 696 - -
Vra2g0128 708 MobiDBLite consensus disorder prediction 61 116 - -
Vra2g0128 708 SUPERFAMILY RNA-binding domain, RBD 377 452 IPR035979 GO:0003676
Vra2g0128 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 441 IPR000504 GO:0003723
Vra2g0128 708 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 422 IPR000504 GO:0003723
Vra2g0128 708 MobiDBLite consensus disorder prediction 79 116 - -
Vra2g0128 708 MobiDBLite consensus disorder prediction 529 583 - -
Vra2g0128 708 SUPERFAMILY CCCH zinc finger 235 257 IPR036855 GO:0046872
Vra2g0128 708 MobiDBLite consensus disorder prediction 526 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0128 Vra-Chr2 1001498 1006527 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0128 - - gmx:100801341 1220.68