Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0127 ATGGATGGTTACGAAGCTACACGAATTGTGTTCTTAAGGGTCCAAACTTTGGACCCAGAAAATGCTTCCAAAATCATGGGTTTGCTTCTGCTTCAAGACCATGGTGAAAAGGAAATGATNANATTAGCATTTGGTCCAGAAGCACTTGTTCACTCAGTGATTGTTAAAGCCNGCAAGGAGTTAGGTTTACCTTTGAACTCTCCGCCAACACCCTCCACTCCTCCTTCTCCTTCACCCTTCCTTCCGAGGCAGAACTCTACTTCTTCAAGGCTCGGTGGTATCAGCCTCCCTCCTACTCTCACCATTCCAAACCCTTCTTCTACTTCTTCTTCATGGCCTACTATGTCTGAGCTTCAAACCCCTGATAGTTTGATGAGCCCCAACAATTTGGTTGTTGGCTCTTCTACTTCTTCATCCTCCTTATCCTTTTATGCAAATGGAGGTTCAGATCCGATTGATGACTTCCAACTTCAAGACCAGCTCTCTTTTCTGAATGATGGTTCTGCTCCTGCTCACAAAAACAACCCTGATTTGTTTTACCCTTGTCACTCGGACTTGTCTTCAAGTCCTACTGCTGCTTCTGACCCTACTCTCTTTCCTTCCTTCGATTGGGGAGGGTCTATTCACCGCAGGAGTTGTTCTGTCAATGATGTTTGTTTGGGCTCTGAGGACTCCAATTCCGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGGGGATACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGACGCTGCTGCTCCTGCTGCAATGGTTGGGTCTCCTAGCAAGCTTGAGATGATGGAGCAGTGCCATGAGCTTTTTAGAGCTAAGTCTTCACAACAGCAGAGACTGGCTGCTGCTTCTCAGTTCATGGCCACTTCTACTTTTCCATACAGCCCAAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGAGAATGTTTGGCTTTGTTACCTTTGTTTACCCGGAGACTGTGAAGCTTATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGTACAGGAAGCAGCAGCAGGTAGATAGAGGGGATTTTTCACCAAGTGGTACTCCTACTGGACTAGATGCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGGAAGCTGATTTGCAGCAAGCTCTAGAGCTCCAAAGTAGGAGGCTAATGGGCCTGCAGCTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACCGGAAGTCCAATTCCTTCCCCAGCACACTCTCTTAACATGTTCAACCAAAATCTTGTTCTTCCTTCTTTTCACAATATTTCCGAGGCCCCAAAGGAGAATGGTTCAACTTCTGCTCCACCTAGTACTGCTTCAGTTTCTGCTGGTCTGCAATCTGTCAACGTTTCTGTTGGCAAGGAAGTGGTGATCAATGGCGAGAATGGATTGAATGAAGGCAATGACAAGCAGAACTCTGGTCATGAAGATATTGATTTGCAAGAATGCTCGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGAGACTTGATGGTTTCCTTCTCTAATGGAACTGTTGAGGCCATTGACACAGATGCCTCGGGTGCATCTGTCAACTCCAAATTTGGTACTAGTGCATTGCTTCCACCAGCATCTGCAATTGACATGGGGACTTTCAAATCCTATAACTGTCAAATACCAAGGTTCCCTTCTGGCCATGGAACTTTTGGGATGTTCCCGGGCACGGGTGGCCCGATTGGCATTTAG 2115 0.4619 MDGYEATRIVFLRVQTLDPENASKIMGLLLLQDHGEKEMXXLAFGPEALVHSVIVKAXKELGLPLNSPPTPSTPPSPSPFLPRQNSTSSRLGGISLPPTLTIPNPSSTSSSWPTMSELQTPDSLMSPNNLVVGSSTSSSSLSFYANGGSDPIDDFQLQDQLSFLNDGSAPAHKNNPDLFYPCHSDLSSSPTAASDPTLFPSFDWGGSIHRRSCSVNDVCLGSEDSNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAAPAAMVGSPSKLEMMEQCHELFRAKSSQQQRLAAASQFMATSTFPYSPKCMNLLLQQQQNDTQRAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQVDRGDFSPSGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEEADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPAHSLNMFNQNLVLPSFHNISEAPKENGSTSAPPSTASVSAGLQSVNVSVGKEVVINGENGLNEGNDKQNSGHEDIDLQECSEHNLPDSPFASPTKAAGDLMVSFSNGTVEAIDTDASGASVNSKFGTSALLPPASAIDMGTFKSYNCQIPRFPSGHGTFGMFPGTGGPIGI* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0127 704 MobiDBLite consensus disorder prediction 62 131 - -
Vra2g0127 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 692 - -
Vra2g0127 704 MobiDBLite consensus disorder prediction 551 572 - -
Vra2g0127 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 253 IPR000571 GO:0046872
Vra2g0127 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 418 IPR000504 GO:0003723
Vra2g0127 704 SUPERFAMILY RNA-binding domain, RBD 373 456 IPR035979 GO:0003676
Vra2g0127 704 SMART c3hfinal6 230 254 IPR000571 GO:0046872
Vra2g0127 704 MobiDBLite consensus disorder prediction 82 131 - -
Vra2g0127 704 CDD RRM_AtC3H46_like 363 432 IPR034365 -
Vra2g0127 704 Gene3D - 222 312 - -
Vra2g0127 704 SUPERFAMILY CCCH zinc finger 231 253 IPR036855 GO:0046872
Vra2g0127 704 ProSiteProfiles Zinc finger C3H1-type profile. 228 255 IPR000571 GO:0046872
Vra2g0127 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 692 - -
Vra2g0127 704 MobiDBLite consensus disorder prediction 67 81 - -
Vra2g0127 704 SMART rrm1_1 362 432 IPR000504 GO:0003723
Vra2g0127 704 Gene3D - 359 460 IPR012677 -
Vra2g0127 704 MobiDBLite consensus disorder prediction 589 609 - -
Vra2g0127 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 361 437 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0127 Vra-Chr2 986558 991856 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0127 - - gmx:100801341 1082.78