Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0115 ATGGAGGAAGTTCAAGAATCCCAACCCCAACCATCGCCTGGTCAAGAAGATGAAAACGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAGGGGAGCCAGCCGCAGAATTCAGTAGTAGCCCCCCAAAAGTTGACTCTGAAGTTGAGGTCCTTCACGAGAAGGTCACCAAACAAATCATTAAGGAAGGCCATGGCCAGAAGCCTTCCAAATATTCAACTTGTTTCTTCCATTACAGGGCTTGGTCTGAGAAAACACAGCACAAGTTTGAAGACACATGGCAGGAGCAAAGGCCAATTGAGATGGTCTTGGGTAAAGAGAAGAAAGAAATGACTGGGTTAGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCATTGGTGCGTGTAGGCTGGGAGTTAGGATATGGAGAGGAAGGAAGCTTTTCTTTTCCAAACGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAACTCATTGGCTTCGATGAAACGAAAGAAGGGAAAGCTCGAAGTGATATGACCGTGGAAGAAAGGATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTCTGTATCAGGAAGAAAAGCTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTTATGTTCCAGTTGTTTGGGAAATATAGAGATATGGCTCTGGCTGTAAAGAATCCGTGCCATCTTAACATGGCAGCTTGTTTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATTTTCTAAAGGCACGTAAACATGCCCCTCAAGACAAAGCAATTGCAAGAGAACTGAAATTGCTTGCTGAACATGACAAGGCCGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTGAACCAGTTCCTAAGTCAAGAAACTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCAATGGCCTTGTCAGCCTCTTCAAGCGTGAAAGGCTTAAATCTGACTAA 1113 0.4438 MEEVQESQPQPSPGQEDENEVITESSAFVKGEPAAEFSSSPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSEKTQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPMADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDAAREDFLKARKHAPQDKAIARELKLLAEHDKAVYQKQKEIYKGIFGPRPEPVPKSRNWLILIWQWLLSVFNGLVSLFKRERLKSD* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0115 370 MobiDBLite consensus disorder prediction 1 46 - -
Vra2g0115 370 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 67 160 IPR001179 GO:0003755
Vra2g0115 370 SMART tpr_5 268 301 IPR019734 GO:0005515
Vra2g0115 370 SMART tpr_5 183 216 IPR019734 GO:0005515
Vra2g0115 370 SMART tpr_5 234 267 IPR019734 GO:0005515
Vra2g0115 370 SUPERFAMILY FKBP-like 47 162 - -
Vra2g0115 370 Gene3D - 39 164 IPR046357 GO:0003755
Vra2g0115 370 SUPERFAMILY TPR-like 175 326 IPR011990 GO:0005515
Vra2g0115 370 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0115 370 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 71 163 IPR001179 GO:0003755
Vra2g0115 370 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Vra2g0115 370 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 39 331 - -
Vra2g0115 370 Gene3D Tetratricopeptide repeat domain 165 296 IPR011990 GO:0005515
Vra2g0115 370 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 39 331 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0115 30 330 Calmodulin-binding Proteins AT3G25230 31.861 6.74e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0115 - - gmx:100790587 696.041