Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0098 ATGGCGTGCATAAAAGGGGTGAATCGATCGGCGTCGGTAGCGCTGGCGCCCGACGCGCCGTACCTTGCTGCCGGGACCATGGCTGGCGCCGTTGATCTGTCATTTAGTTCGTCCGCAAATCTCGAGATATTCAAGCTCGATTTTCAGTCTGACGATTCGGAACTGCCTGTCGTCGCCGAGTGCCCGAGCTCCGACCGCTTCAACCGTCTCACGTGGGGGAAGAACGGTTCTGGCTCCGAAGGATTCGGTCTCGGCCTCGTCGCTGGTGGGTTGGTGGATGGCAACATTGACATCTGGAATCCTCTCACTCTGATCCGCTCGGAGTCAAATCAAAGTTCTCTTGTTGGACACCTTGTAAGACATAAAGGACCAGTTCGTGGTCTTGAATTTAATGTCATTGCACCAAACCTTCTTGCATCTGGTGCTGAGGATGGTGAAATTTGCATATGGGATTTGGTGAATCCTTCTGAGCCTACACATTTTCCACCACTAAAGAGTACTGGCTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAGCACATATTAGCATCTACTTCATATAATGGGACCACAGTGGTCTGGGACCTGAAGAAGCAAAAGCCAGTGATAAGCTTTGCAGATTCGGTTAGAAGGAGATGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACACAACTTGTCGTCGCATCAGATGAAGATGGTTCTCCTTCTTTGAGGCTTTGGGATATGAGGAATATAATTTCACCAATAAAGGAGTTTTCGGGACACACTAGAGGTGTGATTGCAATGTCGTGGTGTCCCAATGATAGCTCTTATTTGCTTACCTGTGGTAAAGATAGCCGAACTATATGCTGGGACATGATTTCTGGAGAGATAGCCTACGAATTGCCAGCTGGGACCAACTGGAATTTTGATGTGCATTGGTATCCTAAGATACCTGGAGTAATATCAGCATCTTCCTTTGATGGAAAAATTGGTATATATAATATTAAGGGTTGCCGTCAAAGTGGTGGTGGGGAAAATGACTTTAGTGCAGTACCACTGAGAGCACCAAAATGGTACAAGCGTCCTGCTGGTGTGTCTTTTGGTTTTGGAGGCAAACTTGTGTCTTTTCATCCCAGAGCATCTTCCACAGGTTCTCCTGGTTCTGGTGCTTCAGAGGTTTATGTTCATAATTTGGTCACTGAAAATGGTCTAGTGAGTCGGTCTTCTGAATTTGAAGCTGCCATACAGAATGGTGAAAGGCCTCTGTTGAGGGTTTTATGTGATAAAAAGTCACAGGAATCAGAATCTGAGGAGGAAAGAGAAACGTGGGGCTTTTTAAAAGTTATGTTTGAAGATGATGGGACTGCACGGACAAAACTCCTCTCACATCTTGGCTTCAATGTACCTAGTGAAGCAAAAGAAGTTAACGATGATCTTTCCCAAGAAATAAATGCACTTGGACTGGAGGATACAACTGTGGACAATGCTGGACATGTGGGTACTAATGAATCGGTTAATTTCTCTACTGATAATGGAGAGGATTTCTTTAACAATCTTCCTAGTCCAAAAGCTGATACCCCTTTATCTACGTCTGCTGGCACTTTTGTTGCTGAAAATGCCAATGGTTCCGAGAAAATTCAAGATGATGCAGAAATGGAAGAGAGCAGTGACCCTTCATTTGATGACAGTGTTCAGCATGCTTTAGTTGTTGGGGATTACAAGGGGGCAGTTATGCAATGCATTTCTGCCAATAAATGGGCAGATGCATTAGTTATTGCTCATGTTGGGAATGCTTCCTTGTGGGAAAGTACACGTGATCAGTACCTTAAAATGGTCCGATCACCATACTTGAAGATTGTATCCGCAATGGTGAGCAATGATCTATTGAGCTTAGTGAACACTAGGCCCCTGAAATTCTGGAAGGAAACCCTTGCTCTTCTTTGTAGTTTTGCTCAGAGAGATGAATGGACCATGCTTTGTGACACACTTGCATCAAAGCTCATGGGTGCTGGCAATACATTAGCTGCAACCCTGTGTTATATATGTGCTGGGAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCTTATCTAATGAGTACGAGGGGAAATCTTATGTTGACCTTCTTCAGGATTTAATGGAAAAGACTATTGTCCTTGCCTTGGCAACTGGGCAGAAGCGGTTTAGTGCTTCTCTGTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAGCCAGTCAAGGGCTATTGACTACAGCAATGGAGTATTTAAAACTTTTGGGTTCTGAAGAACTGTCACCTGAACTTACGATTTTGAAAGATCGAATTGCACTTTCTACAGAACCTGAGAAAGAGTTCAAAACCGCTGCTTTTGAAAATACTCAAGCACATGGTGGGTCCTATTACGGTGCCGATAATTCCAATTATAATAGAAATTACTATCAGGAGTCTGTACCCACTCAAGTGCAGCATGGTGTTTCTGGAATTCAATATCCTGATAGCTATCAACAGCCGTTTGATCCTAGATACGGAAGAGGTTATGGTGCTCCTACTCCACCCCAGCAACCTCAACAGCCTAATTTGTTTGTTCCACCGCAGACCACCCAAGTTGCACAAACTCCCCAGCTGAATTTCTCAAGCACTGCTGTTGCACCACCTCCTTTGAGAACTTTTGATCCTCAAACTCCTCCCGTGCTCAGAAATGTGGAGCAGTATCAGCAACCCACATTGGGTTCTCAGTTGTATAATACAACCACCAATCCACCTTACCAGCCTACACCCACTGCTACATCACAAGTGGGCTTGGGTCATGGCCACAACCTGTCTCAAGTTGCTGCCCCTACACCAAATCCGATGGGATTCATGCCAGTCCCCAGTTCTGGTGGTGTCCAAAGACCTGGGGTGGGATCAATACAACCACCCAGTCCCCCTCAAGTGCAACCTGTGCAACCAGCTGCTGCACCACCCGCTCCACCTCCAACTCTGCAGACTGCTGATACTTCAAAAGTACCTGGGCATCAAATGCCTATTGTCACAACATTGACAAGACTCTTCAACGAGACATCAGATGCCCTGGGAGGTTCCCGTGCAAACCCATCAAAGAAGCGGGAGATAGAAGACAACTCGAAGAGACTTGGTGGGTTGTTTGCCAAGTTGAATAGTGGAGACATTTCCAAAAATGCTTCTGATAAGCTCCTTCAGCTTTGTCAGTCATTAGACAATGGTGATTTTGGTACAGCCTTACAAATTCAGGTTCTTCTCACTACCACCGAGTGGGATGAATGCCAATCCTGGTTAGGTTCACTCAAGCGGATGATCAAGACAAGGCAGAGCGTGAGACTAAGTTAA 3351 0.4527 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDSELPVVAECPSSDRFNRLTWGKNGSGSEGFGLGLVAGGLVDGNIDIWNPLTLIRSESNQSSLVGHLVRHKGPVRGLEFNVIAPNLLASGAEDGEICIWDLVNPSEPTHFPPLKSTGSASQGEISFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVLQWNPDVATQLVVASDEDGSPSLRLWDMRNIISPIKEFSGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDMISGEIAYELPAGTNWNFDVHWYPKIPGVISASSFDGKIGIYNIKGCRQSGGGENDFSAVPLRAPKWYKRPAGVSFGFGGKLVSFHPRASSTGSPGSGASEVYVHNLVTENGLVSRSSEFEAAIQNGERPLLRVLCDKKSQESESEEERETWGFLKVMFEDDGTARTKLLSHLGFNVPSEAKEVNDDLSQEINALGLEDTTVDNAGHVGTNESVNFSTDNGEDFFNNLPSPKADTPLSTSAGTFVAENANGSEKIQDDAEMEESSDPSFDDSVQHALVVGDYKGAVMQCISANKWADALVIAHVGNASLWESTRDQYLKMVRSPYLKIVSAMVSNDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMGAGNTLAATLCYICAGNIDKTVEIWSRSLSNEYEGKSYVDLLQDLMEKTIVLALATGQKRFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSEELSPELTILKDRIALSTEPEKEFKTAAFENTQAHGGSYYGADNSNYNRNYYQESVPTQVQHGVSGIQYPDSYQQPFDPRYGRGYGAPTPPQQPQQPNLFVPPQTTQVAQTPQLNFSSTAVAPPPLRTFDPQTPPVLRNVEQYQQPTLGSQLYNTTTNPPYQPTPTATSQVGLGHGHNLSQVAAPTPNPMGFMPVPSSGGVQRPGVGSIQPPSPPQVQPVQPAAAPPAPPPTLQTADTSKVPGHQMPIVTTLTRLFNETSDALGGSRANPSKKREIEDNSKRLGGLFAKLNSGDISKNASDKLLQLCQSLDNGDFGTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVRLS* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0098 1116 MobiDBLite consensus disorder prediction 541 561 - -
Vra2g0098 1116 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Vra2g0098 1116 Gene3D Functional domain of the splicing factor Prp18 1004 1115 - -
Vra2g0098 1116 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Vra2g0098 1116 MobiDBLite consensus disorder prediction 956 1005 - -
Vra2g0098 1116 Gene3D - 353 781 - -
Vra2g0098 1116 Gene3D - 1 337 IPR015943 GO:0005515
Vra2g0098 1116 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Vra2g0098 1116 MobiDBLite consensus disorder prediction 512 531 - -
Vra2g0098 1116 MobiDBLite consensus disorder prediction 971 996 - -
Vra2g0098 1116 Pfam Sec23-binding domain of Sec16 565 760 IPR024298 -
Vra2g0098 1116 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Vra2g0098 1116 PANTHER SEC31-RELATED PROTEIN 2 1114 IPR040251 GO:0006888
Vra2g0098 1116 SMART WD40_4 204 248 IPR001680 GO:0005515
Vra2g0098 1116 SMART WD40_4 295 335 IPR001680 GO:0005515
Vra2g0098 1116 SMART WD40_4 161 201 IPR001680 GO:0005515
Vra2g0098 1116 SMART WD40_4 252 292 IPR001680 GO:0005515
Vra2g0098 1116 SMART WD40_4 111 151 IPR001680 GO:0005515
Vra2g0098 1116 SMART WD40_4 54 100 IPR001680 GO:0005515
Vra2g0098 1116 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
Vra2g0098 1116 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 152 IPR001680 GO:0005515
Vra2g0098 1116 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN, ANCESTRAL COATOMER ELEMENT 1, SEC16/SEC31-RELATED 2 1114 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0098 118 352 Miscellaneous Gene Families AT5G08390 22.363 2.97e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0098 K14005 - gmx:100788642 1997.25