Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra2g0067 | ATGAAATACAACCTTGTTAGTCTTTTGGAACAATGTTCAAGCATGAGAGAGATGAAGCAAATCCACGCCTACTCCATCACTACCTCCCTGGCTCGCTTTACCTTCATCTCAAGCAAACTTTTGGCTTTCTGCGCTCTCTCTCCCCACGCCGATATCCGCCACGCCCATACCCTCTTCTCTTGCATCCCTTTCCCAACTCTCTTTCAATACAACACCATCATCGCCGCCTTTTCCCGCCGCTCTTCCTCCCTCTTCCTCCGAATGCTAAACGACACCCTTTGTCCTAACGCCCGCACTTTTACCCTCCTTCTCTCCAAAGCCTCCCCTTCTCTCTCCTTCACCCAACAGCTCCATTCCCTCATCCTCCGACTCGGCCATCTTGCGGATCCCTACGTTGCCACCTCCCTTGTCGCCGCCTACTCCAAATATGCCTGCACACGAGCCGCTCGCCGCGTGTTCGACGAAAGTCCTAACAAAAACGTGGCGTGCTGGACAAGCCTCCTCACCGGCTACTGCAACAACGGCTTGGTATACGAAGCTAGGAAGGTGTTCGACGCAATCTCCGACAAAAACGACGTGTCATACAGTGCAATGGTCTCCGGTTACGTCAGAAACGGATTTTTCTGTGAGGCCATTCAACTTTTTCGTGACCTGAAAAACTGTTTTGCAACTGTGAAGCCTAATAATTCTCTTTTGGCAAGTGTTCTCGGCGCGTGTGCTGCCACCGGCGCGTTTGAAGAAGGAAAGTGGATTCACTCTTATGTACACCGACACGGAGAGTTAGAATATCACGAAGTTGAGCTCGGAACCGCGTTGATCGATTTCTACGCAAAGTGCGGGTGCGTGGAGCCTGCTGAGAGGGTGTTCGGTAAGATGAAAATCAAAGACGTTGCGGCGTGGAGCGCGATGATACTGGGCCTGGCCATTAACGGGAAGAATCGTTGGGCCCTTGAGCTTTTTGCGGAGATGGAGAAGGTGGGCCCGAGGCCCAACGGTGTTACCTTCATCGGCGTTCTGACAGCGTGCAATGACAAAGAGCTGTTTGGCAGAGCAGTTACATTGTTCCAATACATGAGGGAGAAACATGGGATTGCAGCGTGGATTGAACACTATGGCTGTGTGGTTGATGTGTTGGCTCGAGCCGGGAAGATCGAGGAGGCGGTGGCGTTCATGAGTGGCATGGAAATGGAAGCTGACGGAGCCATATGGGGGTGTTTGGTGAATGGGTGCTTGATGCATGGCTACGTTGAGTTGGGTCACAGAATTGCGAGATATTTGGTGGAGTTTGAATGTGAGCACAGTGGAAGGTACGTTGCTCTGGCGAAGTTCTACGCCGGAATGGGACGGTGGGAGGCTGTTATGGACACCAGGAATCTGATGAAACGCAGAGCTGTGCCGCCGCTCACTGCTTCCAGTTTCATAGAGATTCATGGCTCTGCTTCCTCTTCCGAACAACTCTATATCCACTGTTGA | 1473 | 0.52 | MKYNLVSLLEQCSSMREMKQIHAYSITTSLARFTFISSKLLAFCALSPHADIRHAHTLFSCIPFPTLFQYNTIIAAFSRRSSSLFLRMLNDTLCPNARTFTLLLSKASPSLSFTQQLHSLILRLGHLADPYVATSLVAAYSKYACTRAARRVFDESPNKNVACWTSLLTGYCNNGLVYEARKVFDAISDKNDVSYSAMVSGYVRNGFFCEAIQLFRDLKNCFATVKPNNSLLASVLGACAATGAFEEGKWIHSYVHRHGELEYHEVELGTALIDFYAKCGCVEPAERVFGKMKIKDVAAWSAMILGLAINGKNRWALELFAEMEKVGPRPNGVTFIGVLTACNDKELFGRAVTLFQYMREKHGIAAWIEHYGCVVDVLARAGKIEEAVAFMSGMEMEADGAIWGCLVNGCLMHGYVELGHRIARYLVEFECEHSGRYVALAKFYAGMGRWEAVMDTRNLMKRRAVPPLTASSFIEIHGSASSSEQLYIHC* | 491 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra2g0067 | 490 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 3 | 481 | - | - | |
| Vra2g0067 | 490 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 190 | IPR002885 | - | |
| Vra2g0067 | 490 | Pfam | E motif | 415 | 463 | IPR046848 | - | |
| Vra2g0067 | 490 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 191 | 221 | IPR002885 | - | |
| Vra2g0067 | 490 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Vra2g0067 | 490 | TIGRFAM | PPR: pentatricopeptide repeat domain | 163 | 188 | IPR002885 | - | |
| Vra2g0067 | 490 | TIGRFAM | PPR: pentatricopeptide repeat domain | 193 | 219 | IPR002885 | - | |
| Vra2g0067 | 490 | Pfam | PPR repeat | 193 | 220 | IPR002885 | - | |
| Vra2g0067 | 490 | Pfam | PPR repeat | 370 | 395 | IPR002885 | - | |
| Vra2g0067 | 490 | Pfam | PPR repeat | 163 | 187 | IPR002885 | - | |
| Vra2g0067 | 490 | Pfam | PPR repeat | 270 | 295 | IPR002885 | - | |
| Vra2g0067 | 490 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 3 | 481 | - | - | |
| Vra2g0067 | 490 | Pfam | Pentatricopeptide repeat domain | 296 | 342 | IPR002885 | - | |
| Vra2g0067 | 490 | Gene3D | Tetratricopeptide repeat domain | 268 | 484 | IPR011990 | GO:0005515 | |
| Vra2g0067 | 490 | Gene3D | Tetratricopeptide repeat domain | 83 | 267 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra2g0067 | Vra-Chr2 | 556805 | 558649 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra2g0067 | 2 | 476 | Glycoside Hydrolase | AT3G49170 | 26.804 | 2.24e-52 | 188 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra2g0067 | - | - | gmx:106795222 | 647.121 |