Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0060 ATGGGTTTTCCGCAAAGGTTAAGGTTAGTGTTCATGCTGTTGTTGATGTGGTGTGTAAATGTAAGAGGTTTGCAGCATAATTATGGAGAGGCCTTGTCAAAGAGCATATTATTCTTTGAAGGGCAGAGATCAGGGAAGCTCCCACCAACACAGAGGATGACTTGGAGGAAGGATTCTGCACTTCATGATCTCTATCTTCTCCCTCCACATGCTACTACAATATTTCCTTTCCCTCAAAAAGTTGACTTGGTTGGGGGATACTACGATGCTGGTGACAACGTGAAATTCAACTTTCCAATGGCATTTTCAACGACGATGCTGGCGTGGAGTGTAATAGAGTTCGGAAAATTCATGGGTCCAGATCTTAAACACGCGCTGGACGCTATTCGTTGGGGTACGGAGTATTTTCTGAAAGCCACAAGCATCCCTGGAATAGTGTTTGCACAAGTTGGTGACCCTTATGCTGATCATAACTGCTGGGAGAGACCTGAAGACATGGACACCCTCAGAACAGCCTACGCCGTTAGCAGGGACCACCCTGGCTCTGAAGTCTCTGCAGAGATTGCAGCAGCACTTGCAGCTTCTTCTATTGTCTTCAGGAAATATCACATTGGTTATTCTGCAAGGCTTCTGCAAAGGGCCATAATGGTTTTCGACTTTGCCGATAAATACAGAGGATCATACAACGACAGCCTCGGACCGTGGGTGTGTCCATTCTATTGTGATTTTGGTGGCTACCAGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTGAAGGCTACTAAGCGCCCTTATTACTTTGATTACATTGATCAAAACATTCATAATCTGAAAAGCTTCGCTGAATTTGGATGGGACACAAAGGACGCTGGCATCAACGTGCTCCTTTCAAAGCTTCTAATCAATAGCAGCTCAAATTCTAACCCTTTCACATTCAATGCGGACAAGTTTGTCTGTAGTGTGCTGCCTGAATCACCTTCGGTATCAGTCAAATACTCTCCAGGTGGGCTTCTGTTCAAGCCTGGGGGAAGTAACTTACAGCATACAACAGCAATCTCATTCCTGTTTCTGGTTTATGCTGGCTATTTGAAGAAGACAAATAAAGAGATTGACTGTGGTGGTAACGTTTTTGCTTCTCGAACCCGACTTAGACAAATAGCAAGAGGCCAGGTGGATTACATACTAGGAAGCAATCCACTGAATATGTCATACATGGTAGGATATGGAGCGAAATACCCTGAAAAAATACATCATCGTGCGTCGTCGTTGCCATCAGTGGATGATTATCCTCCTCGTATTGGTTGCAAAGAAGGATCTTTTTACTTTGAAAGCCAAAATCCAAACCCCAATTTGCTCTCAGGAGCTGTCGTGGGAGGACCTTATCCTAACGATTCGTACGCAGATTCTCGAACAGATTTTGTACACTCTGAACCGACAACATACGTAAATGCACCCCTTGTCGGTGTTTTGGCTTACTTCAATGCACATTCATTCTAA 1497 0.4456 MGFPQRLRLVFMLLLMWCVNVRGLQHNYGEALSKSILFFEGQRSGKLPPTQRMTWRKDSALHDLYLLPPHATTIFPFPQKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGPDLKHALDAIRWGTEYFLKATSIPGIVFAQVGDPYADHNCWERPEDMDTLRTAYAVSRDHPGSEVSAEIAAALAASSIVFRKYHIGYSARLLQRAIMVFDFADKYRGSYNDSLGPWVCPFYCDFGGYQDELVWGAAWLLKATKRPYYFDYIDQNIHNLKSFAEFGWDTKDAGINVLLSKLLINSSSNSNPFTFNADKFVCSVLPESPSVSVKYSPGGLLFKPGGSNLQHTTAISFLFLVYAGYLKKTNKEIDCGGNVFASRTRLRQIARGQVDYILGSNPLNMSYMVGYGAKYPEKIHHRASSLPSVDDYPPRIGCKEGSFYFESQNPNPNLLSGAVVGGPYPNDSYADSRTDFVHSEPTTYVNAPLVGVLAYFNAHSF* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0060 498 PANTHER ENDO-1,4-BETA-GLUCANASE 10 496 - -
Vra2g0060 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 393 419 IPR018221 -
Vra2g0060 498 PANTHER ENDOGLUCANASE 10 496 - -
Vra2g0060 498 SUPERFAMILY Six-hairpin glycosidases 9 495 IPR008928 GO:0005975
Vra2g0060 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Vra2g0060 498 Gene3D - 24 497 IPR012341 GO:0005975
Vra2g0060 498 Pfam Glycosyl hydrolase family 9 28 490 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0060 Vra-Chr2 504309 506432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0060 9 497 Glycoside Hydrolase AT1G70710 59.432 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0060 K01179 - gmx:100775752 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0060 2 504309 506432 Vra2g0060 2 504309 506432 ECH