Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0022 ATGGCCGAAAATGATTCTAACCCTCCTCCTCCTCCTCCAGCCGCTTCACCGCCTCAGGAGCCTCCTGTGCCACCGTCACTATCATCGGAGAATGATGCCAAAGTTGACGATGTGGTTGAAGAGAAGGTGAAAGCTGAGGAGGTGCTTGTGGCTGAAGAGAAAGACAAAGAGAAAGACGAAGTAAAAGGAGTTGAGGAGGCGGTTGTAGTTGAAGAGAAGGAGAAGGAGAAGGAGGAGGAGAAGGAGGAAGAGAAAGAGAAAGAGAAAGAAGAAGAGGTTACAGTAGGAGAGACAGAGAGCGAGTCGTTGAAGGAGGAGAGCAATAGGGTTTCTGATTCGGAGAGAAAGGGCATCGAAGAGCTGAAGAAGGTGGTGAGGGAGGAGTTGGAGCGGAAGGAGGAAGGCGAAGTATCCATCTGGGGCGTCCCTCTCTTTAAGGACCAGAGGACTGACGTCATTCTTCTGAAGTTCCTGAGAGCGCGAGACTTGAGGGTGAATGATGCTCTTGTGATGATTCAGAACACTCTCCGATGGAGAAAGGAGTTCGGCATCGATGCTCTTTTGGAGGAAGATCTGGGAGAGGAGTTGGAGAAGGTGGTCTTCATGCACGGCCACGGAAGAGAGGGCCATCCCGTCTGTTACAACGTCTACGGAGAGTTCCAAAACAAGGAGCTGTACCAAAAGGCTTTCTCCACCGAGGAAAACCGAACCAAGTTTCTCCGATGGCGTATTCAGCTGTTGGAGCGCAGCATCAGGAACCTGGACTTCACTCCTGGAGGCATCAACACCATCTTCCAAGTCAATGACCTCAAAAACTCTCCCGGCCCTGCCAAACGGGAACTTCGCCTTGCCACCAAACAAGCTTTGCAGTTGCTTCAGGACAACTATCCCGAGTTCGTTGCCAAACAGATCTTCATCAATGCCCCTTGGTGGTATCTTGCATTCAATACCATGATCAGTCCCTTCTTGACTCCGAGGACCAAAAGCAAATTTATCTTTGCTGGACCATCCAAGTCTCCCGATACTCTTTTCAAGTATATTTCTCCTGAGCAAGTGCCAGTTCAGTATGGTGGCCTTAGTGTAGACTTCTGCGACTGCAACCCCGATTTCACCATGTCTGATCCTGTCACCGAAATTCCTATAAAGCCAACCACTAAGCAAACTGTCGAAATTGCTATCTATGAGAAATGCATTATCGTTTGGGAGCTGCGGGTGGTGGGCTGGGAGGTTAGCTATAACGCTGAATTCAAGCCTGATGCTAAAGATGCATATACAGTTGTCATACAGAAGGCCACAAAGATGTCCCCCACCGATGAACCAGTGGTTTCCAACAGCTTCAAAGTTGGCGAACTGGGGAAGTTATTGCTCACCATAGACAATCCTACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAATATCAAACCCTACTGTGATTGA 1440 0.4889 MAENDSNPPPPPPAASPPQEPPVPPSLSSENDAKVDDVVEEKVKAEEVLVAEEKDKEKDEVKGVEEAVVVEEKEKEKEEEKEEEKEKEKEEEVTVGETESESLKEESNRVSDSERKGIEELKKVVREELERKEEGEVSIWGVPLFKDQRTDVILLKFLRARDLRVNDALVMIQNTLRWRKEFGIDALLEEDLGEELEKVVFMHGHGREGHPVCYNVYGEFQNKELYQKAFSTEENRTKFLRWRIQLLERSIRNLDFTPGGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQIFINAPWWYLAFNTMISPFLTPRTKSKFIFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIPIKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYNAEFKPDAKDAYTVVIQKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTLKKKRLLYRFNIKPYCD* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0022 479 SMART sec14_4 194 361 IPR001251 -
Vra2g0022 479 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 189 358 IPR001251 -
Vra2g0022 479 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g0022 479 MobiDBLite consensus disorder prediction 1 112 - -
Vra2g0022 479 MobiDBLite consensus disorder prediction 33 112 - -
Vra2g0022 479 SMART CRAL_TRIO_N_2 150 175 IPR011074 -
Vra2g0022 479 Coils Coil 54 95 - -
Vra2g0022 479 ProSiteProfiles GOLD domain profile. 369 474 IPR009038 -
Vra2g0022 479 CDD SEC14 198 359 IPR001251 -
Vra2g0022 479 Gene3D - 103 394 IPR036865 -
Vra2g0022 479 Pfam CRAL/TRIO domain 198 358 IPR001251 -
Vra2g0022 479 SUPERFAMILY CRAL/TRIO N-terminal domain 93 191 IPR036273 -
Vra2g0022 479 Pfam CRAL/TRIO, N-terminal domain 125 174 IPR011074 -
Vra2g0022 479 SUPERFAMILY CRAL/TRIO domain 199 368 IPR036865 -
Vra2g0022 479 PANTHER PATELLIN-1 31 479 IPR044834 GO:0008289
Vra2g0022 479 PANTHER PATELLIN-3 31 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0022 Vra-Chr2 271263 273660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0022 154 353 Acyl Lipid Metabolism Gene Families AT5G47730 26.540 6.27e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0022 - - gmx:100804006 674.855