Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0020 ATGGCCCAAGAAACCCAAAACCCACCTCCCCCTCAGGAAGTGCCGCCCGTTGTGGACCCTGTCCCTCTCGACAACGCACCTACCACCGAACCTCAACCCGAAGCTCAACCCGAACCTCAACCTCAACCTGAACCCGAACCTGAAACTGAAACCCAGGAGAAGGTCCAGACCGCTGTTGAAGACAAGATTTCCGAATCGGTTTCGTTCAAGGAGGAGACCAACGTCGTCGGCGATCTCCCCGAGGCGCAGAAGAAAGCCCTTGATGAACTCAAGAAGCTTGTTCAAGAAGCGCTCAACAAGCGTGAGCTAACCGCGCCCAAGCCCCCCACGCCAGAGCCAGAGAAGAAGAAACCAGACACCGTCAAGGAGCCTGAAGTGGCAGCGGGAGAAGCAGAGAAGAAGGAGCCGGAAGGGGCCGCAGAAGAAGCGGAGAAGAAGGAAATTGAAGTTAAAGAAGAGAAGAAGGAAGTAGAAGTGACTGAAGAGAAGAAGGAGGTTGAATATAAGGAAGAGAAGAAGGATGTTGAAGTGACAGAAGAGAAGAAGGATGCTGAAGTTAAAGAAGAGAAGAAGGAAGTACAAGTGACAGAAGAGAAGAAGGAAATAGAAGTAACGGAAGAGAAGAAGGAAGTACAAGTGACAGAAGAGAAGAAAGATGTAGAAGTGACAGAAGAGAAGAAGGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTAACTGAAGAGAAGAAGGAAGAAGGGGTGATAGAAGAGAAGGAGGTTGTTGAAGCGACAGAAGCGAAGGAGGCGGAAGAGGAACTTGGTCCGGAGGAAGTTGAGATATGGGGAATTCCGCTGCTGGCGGATGAGAGGAGCGATGTGATTCTGCTAAAGTTTCTGAGAGCGAGGGATTTCAAGGTAAAGGATGCTTTCACCATGCTCAAGAACACAGTGCGTTGGAGGAAGGAATTCGGAATCGACGCTCTGGTCCTGGAAGATTTCGGAACTGATTGGGACAAGGTGGTGTTCACTGAGGGACACGACAAACAAGGGCACCCCGTGAATTACAACGTCTTTGGTGAGTTCGAGAATAAGGAGTTGTACAACAAGACCTTTGCGGACGAGGAGAAGCGCAACAAGTTCATCAGGTGGAGGATTCAGGTGCTGGAGAAGAGCGTGAGAAGCCTTGACTTCTCTCCCACTGCCATCTCCACCATTGTGCAGGTCAACGACCTCAAGAACTCTCCGGGACTCGGCAAGAGTAACCTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCTGAATTTGTGGCCAAGCAGATATTTATCAATGTTCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCGTTCTTCACACAGAGGACCAAGAGCAAATTTGTGTTTGCTGGGCCATCCAAGTCTGCCGAAACCCTTTTCAAATATATTGCTCCGGAGCTGGTGCCCATTCAATACGGTGGACTGAGCAGAGAGGGTGAACAGGAATTCACCACTTCTGATCCTGTTACGGAGGTCACAATCAAACCCGCATCCAAACATGCTGTCGAGTTCCCAGTTTCTGAGAAAAGCCACCTGGTTTGGGAAATCCGAGTAGTGGGTTGGGATGTGAGCTACGTAGCTGAATTTGTGCCCAGCGCTGAGGATGGATACACTGTCATTGTGCAGAAGAACAGGAAAATTGCTCCCGCAGATGAGACCGTGATCAGTAACGGTTTCAAAATTGGTGAAGCTGGCAAGGTAGTGCTCACCATAGACAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCAAAGACCAAACCCATCGCAGAGTGA 1950 0.4933 MAQETQNPPPPQEVPPVVDPVPLDNAPTTEPQPEAQPEPQPQPEPEPETETQEKVQTAVEDKISESVSFKEETNVVGDLPEAQKKALDELKKLVQEALNKRELTAPKPPTPEPEKKKPDTVKEPEVAAGEAEKKEPEGAAEEAEKKEIEVKEEKKEVEVTEEKKEVEYKEEKKDVEVTEEKKDAEVKEEKKEVQVTEEKKEIEVTEEKKEVQVTEEKKDVEVTEEKKEVEVTEEKKEVEVTEEKKEEVEVTEEKKEVEVTEEKKEVEVTEEKKEVEVTEEKKEEGVIEEKEVVEATEAKEAEEELGPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTVRWRKEFGIDALVLEDFGTDWDKVVFTEGHDKQGHPVNYNVFGEFENKELYNKTFADEEKRNKFIRWRIQVLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKSNLRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPIQYGGLSREGEQEFTTSDPVTEVTIKPASKHAVEFPVSEKSHLVWEIRVVGWDVSYVAEFVPSAEDGYTVIVQKNRKIAPADETVISNGFKIGEAGKVVLTIDNQTSKKKKLLYRSKTKPIAE* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0020 649 Gene3D - 260 560 IPR036865 -
Vra2g0020 649 SUPERFAMILY CRAL/TRIO domain 373 533 IPR036865 -
Vra2g0020 649 PANTHER PATELLIN-LIKE PROTEIN 1 207 - -
Vra2g0020 649 PANTHER PATELLIN-LIKE PROTEIN 177 649 - -
Vra2g0020 649 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 546 641 IPR036598 -
Vra2g0020 649 MobiDBLite consensus disorder prediction 47 68 - -
Vra2g0020 649 MobiDBLite consensus disorder prediction 98 251 - -
Vra2g0020 649 SUPERFAMILY CRAL/TRIO N-terminal domain 69 363 IPR036273 -
Vra2g0020 649 MobiDBLite consensus disorder prediction 32 46 - -
Vra2g0020 649 MobiDBLite consensus disorder prediction 8 22 - -
Vra2g0020 649 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 362 537 IPR001251 -
Vra2g0020 649 PANTHER PATELLIN-1 177 649 IPR044834 GO:0008289
Vra2g0020 649 PANTHER PATELLIN-1 1 207 IPR044834 GO:0008289
Vra2g0020 649 MobiDBLite consensus disorder prediction 107 251 - -
Vra2g0020 649 Coils Coil 224 281 - -
Vra2g0020 649 Coils Coil 140 217 - -
Vra2g0020 649 SMART sec14_4 366 534 IPR001251 -
Vra2g0020 649 Pfam CRAL/TRIO domain 371 531 IPR001251 -
Vra2g0020 649 SMART CRAL_TRIO_N_2 323 348 IPR011074 -
Vra2g0020 649 ProSiteProfiles GOLD domain profile. 513 644 IPR009038 -
Vra2g0020 649 MobiDBLite consensus disorder prediction 1 81 - -
Vra2g0020 649 PRINTS Cellular retinaldehyde-binding protein signature 326 348 - -
Vra2g0020 649 PRINTS Cellular retinaldehyde-binding protein signature 523 532 - -
Vra2g0020 649 CDD SEC14 368 532 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0020 Vra-Chr2 263994 267000 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0020 327 526 Acyl Lipid Metabolism Gene Families AT1G55840 28.111 7.25e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0020 - K19996 gmx:100806382 617.846