Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0016 ATGAACATGCTGGTGGTAGAGGTTGTGGATGCAAGCGACCTCATGCCCAAAGACGGGGAAGGCTCAGCTAACCCCTTTGTGGAGGTGAAGTTTGATGAGCAGCAGCACACTACTGACACAAAGCACAAAGACCTCAATCCTTATTGGAACCAGAAGCTGGTGTTCCACATCGATAACCCGAGAGATCTTGCGTACAAGACAATTGAAGTGGTTGTATACAATCGCAATGATCGGAACCACAACAATTTCCTTGGAAGGGTGAAACTTTCCGGCTCTTCCATCCCTCTGTCGGAGTCCCAGGCCCGTGTTGAACGCTACCCACTTGAGAAACGTGGCCTCTTTTCAAACATCAGGGGCGATATTGCTCTCAAGTGTTATGCACTGCATGATCCTCTTCCTTCTCATCCTCACCCTCAACCTCAGGACGCCGGCGGCGATCCTGCTGCTGCTTCTGAACAGCATCGTCCTCCTCCCCCTGCCCCGGAGGAGGAGGATCAGCACACTCCCTTGCAAGAAATAAACCCCAACATGGTGGCGGAGGAGGATAGCGTGATCAGTGAAGGGGAGGAGAAGAAAAAGAAGAAGATGAAAAAGAAAGAAAAGGAAGTGAGGACTTTTCACTCTATTCCTGCTGCGGCTGCTGCAGCGAAGGCACAGTTCCAGTCACAGTCCCAGGCGGCAGCGGAAACGGTGAGGAGGGCTGACTTCGCAAAGGCTGGACCACCTAACGTGATGTTGATGCAGATCCCAAAGCAAAACCCCGAGTATGGACTGGTGGAGACAAGTCCTCCTCTGGCGGCTCGCTCGCGGTACAGAGGAGGGGACAAGATATCAACCACATACGACTTGGTAGAACAGATGCATTACTTGTACGTTAATGTTGTAAAGGCGAGGGATCTCCCCGTGATGGATATCACGGGCAGCCTTGATCCTTACGTGGAAGTCAAGCTCGGTAACTACAAGGGCCTCACCAAACACCTGGACAAGAATCAGAACCCCGTTTGGAAGCAAATCTTTGCCTTCTCCAAGGAGAGGTTGCAATCAAATTTGCTTGAAGTGACTGTGAAGGACAAGGACATTGGCAAAGATGATTTTGTTGGGAGAGTTCTGTTTGATCTGACTGAGGTTCCTCTTCGGGTGCCCCCAGACAGCCCCTTGGCTCCTCAGTGGTACAGATTGGAGGACAAGAAGGGCCAAAAAATTCACAACAATGGCGAAATCATGCTTGCCGTTTGGATGGGAACACAGGCCGACGAGTCCTTCCCGGAGGCGTGGCACTCCGACGCTCACAACGTCAGCCACTCGAACCTTGCAAACACCCGCTCAAAGGTATATTTCTCACCCAAGCTTTTCTATCTTAGAGTTCAAGTCATCGAAGCTCAGGATCTTGTTCCTTCCGATAAAGGAAGAGCCCCGGACGCTGTTGTTAGAGTACAGCTCGGGAACCAGATGAGATTCACCCGTCCTTCTCAGATGAGAAGCACCAACCCAGTTTGGAACGACGAGCTCATGTTTGTGGCTGCCGAGCCATTTGAGGATTTCATCATTGTGACTGTGGAGGACAAAGTAGGTCCTAGTGTTGAAATATTGGGAAGGGAGATCATATCAGTTAGAAGTGTTCCACCCAGACACGAGACCAGCAAGCTCCCTGATTCTCGTTGGTTCAATTTGCACAGGCCCAGTGCTGTCGGTGAGGAAGAAACGGAGAAAAAGAAGGAGAAATTCTCGAGCAAGATTCACCTACGAATGTGTCTGGAGGCCGGGTACCATGTGCTGGACGAGTCCACGCATTTCAGCAGTGATCTTCAGCCATCATCCAAACATCTGAGGAAGAAAAACATTGGCATCCTCGAACTCGGGATACTGAGTGCCCGCAATTTGGTGCCCCTGAAGGCCAGGGAAGGTAGGACAACTGATGCTTACTGCGTGGCCAAGTATGGCAACAAATGGGTTCGAACCAGAACTCTGCTTGACACTCTGTCCCCTCGATGGAATGAGCAATATACGTGGGAGGTTTATGATCCATGCACTGTCATCACAATTGGGGTATTTGATAACCACCACATCAATGGGAGCAGTGATTCAAAAGATCAAAGAATTGGAAAGGTTAGAATCCGATTATCAACTCTGGAAACTGATAAGGTGTATACTCATTTTTATCCTCTGCTGGTCCTCCAACCCAATGGCCTGAAGAAGAATGGAGAGCTTCACTTGGCCGTGAGATTCACATGCACCGCTTGGGTGAATATGGTAGCCCAGTATGGCAGGCCTTTGCTTCCCAAAATGCATTATGTCCAACCCATACCTGTGAGGCACATAGACTGGCTCCGCCACCAGGCCATGCAGATTGTGGCAGCTCGCCTATCCAGAGCTGAGCCACCCCTTAGGCGTGAAACAGTTGAGTATATGCTGGACGTGGATTACCATATGTGGAGTCTAAGGAGAAGCAAAGCCAATTTTCACCGCATAATGTCAATCCTCAGAGGAGTTACAGCAGTTTGCAAATGGTTTGATGACATCTGCACCTGGAGAAACCCAATCACAACCTGTCTTGTTCACGTCCTGTTCTTGATACTGGTTTGCTACCCGGAACTGATATTGCCCACCATTTTCCTTTACTTGTTTGTAATTGGAATTTGGAATTACCGGTTCAGGCCAAGGCAACCACCCCACATGGATGCCAGGTTGTCACAGGCAGAAACTGCCCACCCAGATGAACTGGACGAGGAATTTGACACTTTTCCATCCACAAAACCTTCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCGGGTAGAGTACAGACTGTGGTTGGAGATCTAGCTACTCAGGGAGAAAGAGCTCAAGCCATACTGAATTGGAGAGACTCGCGGGCAACATCTATCTTTATCATCTTCTCGCTCATATGGGCCGTATTCATTTACATCACTCCCTTTCAGGTGGTGGCAATTCTCGTAGGCCTATATATGCTACGTCATCCTCGGTTTAGGAGCAAGATGCCTTCAGTACCAATCAATTTCTTCAAGAGATTGCCTTCCAGATCAGACACGCTTATATGA 3069 0.4936 MNMLVVEVVDASDLMPKDGEGSANPFVEVKFDEQQHTTDTKHKDLNPYWNQKLVFHIDNPRDLAYKTIEVVVYNRNDRNHNNFLGRVKLSGSSIPLSESQARVERYPLEKRGLFSNIRGDIALKCYALHDPLPSHPHPQPQDAGGDPAAASEQHRPPPPAPEEEDQHTPLQEINPNMVAEEDSVISEGEEKKKKKMKKKEKEVRTFHSIPAAAAAAKAQFQSQSQAAAETVRRADFAKAGPPNVMLMQIPKQNPEYGLVETSPPLAARSRYRGGDKISTTYDLVEQMHYLYVNVVKARDLPVMDITGSLDPYVEVKLGNYKGLTKHLDKNQNPVWKQIFAFSKERLQSNLLEVTVKDKDIGKDDFVGRVLFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIHNNGEIMLAVWMGTQADESFPEAWHSDAHNVSHSNLANTRSKVYFSPKLFYLRVQVIEAQDLVPSDKGRAPDAVVRVQLGNQMRFTRPSQMRSTNPVWNDELMFVAAEPFEDFIIVTVEDKVGPSVEILGREIISVRSVPPRHETSKLPDSRWFNLHRPSAVGEEETEKKKEKFSSKIHLRMCLEAGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLVPLKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVYDPCTVITIGVFDNHHINGSSDSKDQRIGKVRIRLSTLETDKVYTHFYPLLVLQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRRETVEYMLDVDYHMWSLRRSKANFHRIMSILRGVTAVCKWFDDICTWRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRQPPHMDARLSQAETAHPDELDEEFDTFPSTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAILNWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPINFFKRLPSRSDTLI* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0016 1022 Pfam Plant phosphoribosyltransferase C-terminal 867 1021 IPR013583 -
Vra2g0016 1022 CDD C2B_MCTP_PRT_plant 289 415 - -
Vra2g0016 1022 Pfam C2 domain 289 391 IPR000008 -
Vra2g0016 1022 Pfam C2 domain 452 557 IPR000008 -
Vra2g0016 1022 Pfam C2 domain 4 104 IPR000008 -
Vra2g0016 1022 Pfam C2 domain 615 722 IPR000008 -
Vra2g0016 1022 ProSiteProfiles C2 domain profile. 598 720 IPR000008 -
Vra2g0016 1022 ProSiteProfiles C2 domain profile. 431 555 IPR000008 -
Vra2g0016 1022 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Vra2g0016 1022 CDD C2C_MCTP_PRT_plant 452 604 - -
Vra2g0016 1022 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 1 1021 - -
Vra2g0016 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 289 429 IPR035892 -
Vra2g0016 1022 Gene3D C2 domain 591 744 IPR035892 -
Vra2g0016 1022 Gene3D C2 domain 1 130 IPR035892 -
Vra2g0016 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 452 606 IPR035892 -
Vra2g0016 1022 MobiDBLite consensus disorder prediction 184 203 - -
Vra2g0016 1022 Gene3D C2 domain 276 412 IPR035892 -
Vra2g0016 1022 Gene3D C2 domain 434 585 IPR035892 -
Vra2g0016 1022 PANTHER BNAA09G30540D PROTEIN 1 1021 - -
Vra2g0016 1022 SMART C2_3c 452 549 IPR000008 -
Vra2g0016 1022 SMART C2_3c 3 108 IPR000008 -
Vra2g0016 1022 SMART C2_3c 616 719 IPR000008 -
Vra2g0016 1022 SMART C2_3c 289 385 IPR000008 -
Vra2g0016 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 615 748 IPR035892 -
Vra2g0016 1022 MobiDBLite consensus disorder prediction 130 203 - -
Vra2g0016 1022 CDD C2D_MCTP_PRT_plant 616 739 - -
Vra2g0016 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 141 IPR035892 -
Vra2g0016 1022 ProSiteProfiles C2 domain profile. 271 391 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0016 Vra-Chr2 245875 249570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0016 1 1022 Lipid Metabolism Gene Families AT1G22610 71.578 0.0 1498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0016 - - gmx:100778133 1811.96