Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0015 ATGGAGGACATTGAAGATTTGCTGGCCGGAAGCGGAAGCGCAACTCCACCGGGCTTCCGTTTGCCGTTGGCGGCAGCTGTGGGCGTTGGTGTTGGCGTTGGGAGCAAGCGGAATAAACTCTCTTCTTCGCCTTCTCCTGCAATCCCTGGCACTCAGACTATCTACATAAAGACCTTTGGCTGCTCTCACAACCAGAGTGACAGTGAATATATGGCTGGCCAGCTTTCTGCTTTTGGTTATTCTTTGAGTGACAATCCAGACCAAGCAGATCTCTGGCTCATTAACACTTGCACAGTGAAATCCCCCAGTCAATCTGCTATGGATACCATCATAACGAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGGTATTTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATTGATCGCGTTGTTGAAATTGTAGAAGAGACTTTGAAAGGTCACGAAGTCCGCCTTTTGACCCGTAAGACATTGCCAGCACTCGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCCTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTATACAATTGATAGCCTTGTTGGGCGTGTAAAATCTGTCATTTCTGATGGAGTTAAAGAGATATGGCTTAGCAGTGAGGACACTGGAGCATATGGTCGTGACATTGGTGTGAATCTTCCAACTTTGTTGAAGGCCTTAGTGGAAGAACTACCAGCTGATGCAAGCACAATGCTACGTATTGGAATGACCAATCCACCTTATATCCTTGAACACTTGAAGGAGATAGCTGAGATTTTGCGGCATCCTTGTGTGTACTCCTTTCTCCATGTACCAGTTCAGTCGGGAAGTGATACTGTTTTGACCGCAATGAACAGGGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGTGCAGACTGTCGATCTCGTTAAAGATTACAAGTTCCCCCAAGTTCACATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAGAGAAGAAGCCGAGAATTGACAAATGTCTTTGAATCATTCACACCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATGTTGCTTCTGATGGAATTCACTTGGTTGGTCATACGAAAGGATATATACAAGTTCTTGTACTTGCTCCAGACCATATGCTGGGAGCTTCAGCTATGGCTAAGATAACATCTGTGGGAAGATGGTCTGTCTTTGGGGAAGTAATTGAGACAATCGACCATGTAAGTGACAATAAAGCTCTAAACAAGTTGGTTCCTGATCGGGACTTGCATTCTCTCTGCGTTAACCCAGCCAAGCCTGGTGGATTCTCAGAAGAGCCAGAATCTTGTGCATGTGGAAGTGACATCTGTTGTAGTATCGACAAGAGTGACGCTTCAAGAGGAACTGCAGTGCCACAGAACCAAAGTAATAGAAATTTCGTTGGATGGATACTAAGGAAGCGGGAGCATCTGCACAAAAAAGTTGAGAGTGAGCTTGCCTCGGGATCTGTTAAAAAGCATGAAAGAAAGATGAAGAAGTGGGACTTCGTTGATAAGGTTCTTTTGGGTGGAATATCTATCAGCATCTTTACTATTATTGCTCTTGTAGCTGCTCTTGCGTTCAGAGTAATTTGGTCCCAGTAA 1842 0.4425 MEDIEDLLAGSGSATPPGFRLPLAAAVGVGVGVGSKRNKLSSSPSPAIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRYLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVEELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTVLTAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFVQTVDLVKDYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTPYSGMEGKVERIWITDVASDGIHLVGHTKGYIQVLVLAPDHMLGASAMAKITSVGRWSVFGEVIETIDHVSDNKALNKLVPDRDLHSLCVNPAKPGGFSEEPESCACGSDICCSIDKSDASRGTAVPQNQSNRNFVGWILRKREHLHKKVESELASGSVKKHERKMKKWDFVDKVLLGGISISIFTIIALVAALAFRVIWSQ* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0015 613 CDD Radical_SAM 189 393 - -
Vra2g0015 613 SFLD B12-binding domain containing 152 399 - -
Vra2g0015 613 Gene3D - 53 172 IPR038135 -
Vra2g0015 613 Pfam Radical SAM superfamily 192 364 IPR007197 GO:0003824|GO:0051536
Vra2g0015 613 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 52 160 IPR013848 GO:0035596|GO:0051539
Vra2g0015 613 SMART MiaB 185 409 IPR006638 GO:0003824|GO:0051536
Vra2g0015 613 SUPERFAMILY Radical SAM enzymes 175 409 - -
Vra2g0015 613 ProSiteProfiles TRAM domain profile. 414 476 IPR002792 -
Vra2g0015 613 PANTHER RADICAL SAM PROTEINS 1 506 - -
Vra2g0015 613 Gene3D tm_1862 like domain 183 413 IPR023404 -
Vra2g0015 613 SFLD Radical SAM 152 399 IPR007197 GO:0003824|GO:0051536
Vra2g0015 613 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 54 475 IPR006466 GO:0035598|GO:0035600
Vra2g0015 613 ProSiteProfiles Radical SAM core domain profile. 181 414 IPR007197 GO:0003824|GO:0051536
Vra2g0015 613 ProSitePatterns Methylthiotransferase radical SAM domain signature. 189 209 IPR020612 GO:0051539
Vra2g0015 613 Pfam Uncharacterized protein family UPF0004 54 131 IPR013848 GO:0035596|GO:0051539
Vra2g0015 613 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 53 470 IPR005839 GO:0006400|GO:0016740|GO:0051539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0015 K15865 - gmx:100798865 1077.77