Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0012 ATGCCCCAATTGGTAAAGTTTCGGCTTTTCATGCGCTGCCACGCACTCAAAACCCTTCCTTTCTCCACCCACCGAATGGGCATGGCCGATACCCTCTGTACCCATCTCCACCAAAGCAATGGGAGTGTTGAGAACTCATTGTCCAAGGTTAAGCCTAAACTCGATTCTAAATGTGTCATTGAAGTCCTCAATTCCTGTCATCCCAAGCAACCTCTATTGGGCGTCAGATTTTTCGTTTGGGCTGGATTTCAATCTGGCTACAGGCACAGTGCTCACACGTACAGCAAAGCTTGCAAGTTGTATGGAATTCAGCAAAATCCCCAAATTATTCGTGATGTCGTTCTGTCTTATGAGGCCGAAGGGTGTTTAGTCAATGTCAACATGTTCAGGGAGGTTCTGAAACTGTGCAAAGAAGCCCAACTAGCTGACGTGGCATTGTGGGTGTTGAGGAAGATAGAGCAGAGTTTCAACATCGGTGCTGACACTGTGATGTATAATGTGGTTATTAGGCTATGTTGCAAAAATGGCGACATTGAAACGGCGGAGAAGTTGATCGGGGAGATGAGTTTGAACGGTCTTTACCCTGATCTTATTACGTACATGGCAATAGTGGAGGGATTATGTGATGCGGGTCGCCCAGAGCATGCTTATTCTTTGCTTAAGGTTATGAGAGAACATAGATGTTCAACCAATTTGGTCATTTTATCAGCCATTTTAGATGGCTTGTGTAGGTCTGGATCTATGAAAATGGCATTGGAGTTGTTGGATGAAATGGAGAAAGGTGGGGATTGTCGTCCAAATGTTGTTACTTATACATCTGTGATTCAAAGTTTCTGTAAGAGAGGTCAGTGGACGGAAGCATTGGATATTCTGGATAGAATGAAAGCTTCGGGGTGCCATGCAAATCATGTTACTGTTTTTACTTTCGTTGATAGCCTTTGTGTTGAGGGTCGTGTGGGAGAAGCTTACAAGTTGATTGATAAGTTTGTGGTGGAACATGGTGTTTCTTATGGTGATTGTTGCAGTTCACTTGTGATTTCATTGATAAGGATTAAAAAGCTGGACGAAGCAATGAAGCTCTTCATGGAAATCCTTTCTGGTGATGTCAGACCTGATACTTTGGCATCTAGCCTTTTGCTAAAGGAGCTCTGTATTAAGGACCAGGTATTGGATGGATTCTACTTGCTTGAAACAATTGAAAACAAGGGATGTTTGTCTGCGATTGACTCTAGTATTTATTCTATTCTTTTATTTGGCCTTTGTCAAAGAAGCCACCTGACGGAGGCCACAAAGCTGGCCAAGATAATGCTTAAAAAATCAGTTCCGCTGCAACCTCCGTACAAAGATGGTGCAATCGATGTCCTAATAGAATCTGGAGAAAAAGATATTGTGAACCAGTTGACTGGCATTGGTAAGGGACTTTGA 1425 0.4302 MPQLVKFRLFMRCHALKTLPFSTHRMGMADTLCTHLHQSNGSVENSLSKVKPKLDSKCVIEVLNSCHPKQPLLGVRFFVWAGFQSGYRHSAHTYSKACKLYGIQQNPQIIRDVVLSYEAEGCLVNVNMFREVLKLCKEAQLADVALWVLRKIEQSFNIGADTVMYNVVIRLCCKNGDIETAEKLIGEMSLNGLYPDLITYMAIVEGLCDAGRPEHAYSLLKVMREHRCSTNLVILSAILDGLCRSGSMKMALELLDEMEKGGDCRPNVVTYTSVIQSFCKRGQWTEALDILDRMKASGCHANHVTVFTFVDSLCVEGRVGEAYKLIDKFVVEHGVSYGDCCSSLVISLIRIKKLDEAMKLFMEILSGDVRPDTLASSLLLKELCIKDQVLDGFYLLETIENKGCLSAIDSSIYSILLFGLCQRSHLTEATKLAKIMLKKSVPLQPPYKDGAIDVLIESGEKDIVNQLTGIGKGL* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0012 474 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 21 468 - -
Vra2g0012 474 Gene3D Tetratricopeptide repeat domain 31 190 IPR011990 GO:0005515
Vra2g0012 474 Gene3D Tetratricopeptide repeat domain 261 332 IPR011990 GO:0005515
Vra2g0012 474 Gene3D Tetratricopeptide repeat domain 191 260 IPR011990 GO:0005515
Vra2g0012 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Vra2g0012 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vra2g0012 474 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 468 - -
Vra2g0012 474 Pfam PPR repeat 412 440 IPR002885 -
Vra2g0012 474 Pfam PPR repeat 341 366 IPR002885 -
Vra2g0012 474 TIGRFAM PPR: pentatricopeptide repeat domain 198 230 IPR002885 -
Vra2g0012 474 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Vra2g0012 474 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Vra2g0012 474 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Vra2g0012 474 Gene3D Tetratricopeptide repeat domain 335 469 IPR011990 GO:0005515
Vra2g0012 474 Pfam PPR repeat family 231 280 IPR002885 -
Vra2g0012 474 Pfam PPR repeat family 161 209 IPR002885 -
Vra2g0012 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vra2g0012 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vra2g0012 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0012 101 445 Glycosyltransferase AT1G05670 23.360 1.41e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0012 - - ccaj:109798432 756.518