Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0011 ATGGCGAAATCGGGATCAACCCATGTCACTGCCTCTGCAAAGGTTCACCCTTCCAACGATCCCGAACTGGACCCGGACTCTTACGCCCTCGAGAAGTTCAGACTCTACGAAACCAGAGCGAGGTTTTACCTGATCGGAAGTGATCGGAGCAAGAGGATCTTCCGAGTGTTGAAAATCGATCGATCAGAGCCGTCGGATCTGAATATCAGCCAAGACCCCGTCCTGTATTCACCCCAGGAGATCAAGAGCTTGCTTCAGCGGATTGCTGAGGGTAACAGAGCCACTGGAGGCCTCACTTTCGTCGCTAAGGTTTTCGGAATTGCTGGCTGCATCAAGTTTCTCGAGTCTTACTACTTGATACTCATTACTAAACGTAGACAGATTGGTGCTATATGTGGCCATGCAATCTATAGCATCAAGGAGAGCCAATTGATAACCATTCCACATGTTTCAATGCAATCTGATTTAGCTCACTCTAAGACTGAGCTCAGGTACAAAAAGCTTTTGTCTAGTGTCGATTTGACCAAGGATTTTTTCTATAGTTACACTTACCCTATAATGCAAAGTTTGCAAAAGAACGTATCTCCTAGCGAAGACGGAGGGATGTCGTATGATAATATATTTGTTTGGAATGCATATTTGACACAAGCAATCAGGTCAAGATGCAATAACACTATTTGGACCATAGCTTTAGTTCATGGTCATTTTAGGCAGAGTCGTCTATCAATTTTTGGAAGAGACTTCAGTGTTTCTCTGATTTCTAGACGATCTAGACATTTTGCAGGGACACGTTACTTGAAAAGGGGTGTTAATGATCGGGGGAGGGTTGCTAATGATGTTGAGACAGAGCAGATTGTCCTTGACGAAGAAGCTGGCTCTTGCAAGGGGAAAATGAGTTCAGTTGTGCAAATGCGTGGATCAATACCACTTTTTTGGTCACAAGAAGCATCAAGATTTAGCCCTAAGCCTGACATAATTTTGCAGAGGTATGATCCGACCTACGAAGCAACTAAATTGCATTTTGAAGACCTTGCTAAGAGATATGGCAATCCAATTATTGTTCTGAATCTGATTAAGACAGTTGAGAAAAGGCCTCGAGAAATGATGCTGAGACGTGAATTTGCAAGTGCTGTTGGTTATCTTAACCAAATTCTACCAGTAGAGAACCATCTTAGATTTATTCACTGGGACTTTCACAAATTTGCAAAAAGCAAGTCTGCCAATGTTTTAGCAGTTTTAGGAGCTGTAGCAAGTGAAGCGCTTGATTTAACTGGTTTTTACTACAGTGGTAAACCCAGTATAATAAAGAGAGCCAACAAGAGTAATCGAACTAGCACAGGAAGGGATGCTTCACTGAGAGATCTGAGAGCTAGTTCTGGTGATATTGTGAGGATTGGGAACAGTAATGAAATGATAAACTCTGTGGTTAATCGAGACAAAGATACTGACACTAACCATCAGAATAAAAAAGATAATTTTAGTAGTGATGCACCACATTTTCAGAGTGGAGTTCTTCGTACCAACTGCATTGACTGCTTGGACCGTACAAATGTTGCCCAGTATGCATATGGTCTTCAAGCTTTAGGACGCCAGCTCCATGTAATGGGTTTGACTGATGTGCCCAAAGTGGATCCTGATAGTAGTATCGCTGCAGCTCTAATGGATATGTATCAAAGCATGGGGGATGCTCTTGCTCAGCAGTATGGTGGTTCAGCAGCTCACAATACTGTGTTTCCGGAGAGGCAGGGAAAGTGGAAAGCAACAACACAATCAAGAGAGTTTTTGAAGTCCATAAAACGATATTATAGCAATGCTTACACAGATGGTGAAAAGCAAGATGCAATAAACTTATTTTTAGGTTACTTCCAACCACATGAAGGGAAACCTGCTCTGTGGGAGCTGGATTCAGATTATTATCTCCATGTATCTGGGGTTGGGGATGATCTAATTCCTGAGAAGTGTTCTGAACCGAATCCTAAGCCTTCTGAAAGTGGTGGAATAGTATTCACCCCAATACCAGCTTGCAGAGAAGACTTTTTACGGATAAAGTTGACATCGTTTGACAAGTTAATTGAGAAGACCTGTAGTACAATTAAAAATGTAAGACTATGCTCTGAACCTGATCAGAGACCAGGTGGGAGTTCTGGAAACAGTGGAGTGGCACCTGATGCAGCTGAGATACAGCTAAAAAGCCCGAATTGGCTTTTTGGCCAGAGAAAGTACGAAGAGGGTTCCTCTGCTGCAAAAGTAGCTTCTAATGAAACTGACGTTGAAGGATCTCATGCTAATGGATTTTGTGACTTGAATTGGCTTTCTTCTGGCAGTGATATGAATGAAGAGGATGTTTTCCAAAGGTACCTTGCAATGACCTCAGCAAATGAGGCGAATGGGTGGTATGGAGGTAGTCTCCTCGGCGATCAAGATGAAAGCAGTGAGATATATAAACATTATGCCGAGCTATGTCAGGGACCTGCCTTGGAACTTTTCCAAAATGACTCTGAGAGGGAGCAACACTACGCAGATGCTTTAAGCACGAGTTCATATGAAATTGTTAATGATACTAGCGTTGCGACAGAAATGGAAGCAGCTCTAAAGGAGTATGACCAAGTTGGTGCTGACCTTGGGATCATTCCCAGATCTTGTAAATTCTTTGCTGATGATCCGAGTTGGCTTACAAGATGGTTAACTGGGGAAGAAAAACTACAAAGGATATGA 2715 0.4254 MAKSGSTHVTASAKVHPSNDPELDPDSYALEKFRLYETRARFYLIGSDRSKRIFRVLKIDRSEPSDLNISQDPVLYSPQEIKSLLQRIAEGNRATGGLTFVAKVFGIAGCIKFLESYYLILITKRRQIGAICGHAIYSIKESQLITIPHVSMQSDLAHSKTELRYKKLLSSVDLTKDFFYSYTYPIMQSLQKNVSPSEDGGMSYDNIFVWNAYLTQAIRSRCNNTIWTIALVHGHFRQSRLSIFGRDFSVSLISRRSRHFAGTRYLKRGVNDRGRVANDVETEQIVLDEEAGSCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYEATKLHFEDLAKRYGNPIIVLNLIKTVEKRPREMMLRREFASAVGYLNQILPVENHLRFIHWDFHKFAKSKSANVLAVLGAVASEALDLTGFYYSGKPSIIKRANKSNRTSTGRDASLRDLRASSGDIVRIGNSNEMINSVVNRDKDTDTNHQNKKDNFSSDAPHFQSGVLRTNCIDCLDRTNVAQYAYGLQALGRQLHVMGLTDVPKVDPDSSIAAALMDMYQSMGDALAQQYGGSAAHNTVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLGYFQPHEGKPALWELDSDYYLHVSGVGDDLIPEKCSEPNPKPSESGGIVFTPIPACREDFLRIKLTSFDKLIEKTCSTIKNVRLCSEPDQRPGGSSGNSGVAPDAAEIQLKSPNWLFGQRKYEEGSSAAKVASNETDVEGSHANGFCDLNWLSSGSDMNEEDVFQRYLAMTSANEANGWYGGSLLGDQDESSEIYKHYAELCQGPALELFQNDSEREQHYADALSTSSYEIVNDTSVATEMEAALKEYDQVGADLGIIPRSCKFFADDPSWLTRWLTGEEKLQRI* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0011 904 MobiDBLite consensus disorder prediction 478 497 - -
Vra2g0011 904 Pfam SacI homology domain 105 401 IPR002013 GO:0016791
Vra2g0011 904 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 29 852 IPR043573 GO:0043813|GO:0046856
Vra2g0011 904 MobiDBLite consensus disorder prediction 478 493 - -
Vra2g0011 904 MobiDBLite consensus disorder prediction 1 23 - -
Vra2g0011 904 ProSiteProfiles Sac phosphatase domain profile. 169 570 IPR002013 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0011 Vra-Chr2 171503 185208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0011 1 904 Acyl Lipid Metabolism Gene Families AT1G22620 74.232 0.0 1430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0011 K22913 - gmx:100800092 1700.64