Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0008 ATGAGTGAGAGTAACGGGAACAGTAAGAGGCCAAATGTTGAAGATCAAGATCTGGGACTGTACTTCTTGGAAGCGTGCAGGGGAAGGGAGATGAGAGAGAGGGAGAAGGAGAAGGAGAAAGAGACAGAGGAGGAAGAGGAGGAGGCGCCGAGGGAGCTCAACACGATTAACAGCTCCGGTGGCTTCGTGGTGGTGTCAACAGACAAGCTGTCGGTGAAGTACACCAACGTCAACCTTCACGGCCACGATGTCGGCGTCATTCAGGCCAACAAGCCTTCTCCTACCAAGCGCCTCATCTACTATTTCGAGATTCATGTCAAGGATGCTGGCGTCAAGGGTCAAATTTCCATTGGCTTCACCTCCGAGACATTCAAGATGCGAAGGCAGCCAGGGTGGGAGGCCAATAGCTGCGGCTATCATGGTGACGATGGTCTTCTTTACCGTGGACATGGCAAGGGGGAAGCCTTTGGTCCAACCTATACGTCGGGTGATGTAGTTGGTGCCGGAATTAACTACGCCGCGCAGGAATTCTTTTTCACTAAAAATGGCCAAGTTGTCGGCTCTGTTTACAAAGACTTGAAAGGCCCCCTTTTTCCTACTATAGCAGTTCATAGCCAAAATGAGGAGGTGCATGTTAACTTTGGGCAGAAACCATTTACTTTCGACTTAAAAGAATTTGAAGCACAAGAAAGAATGAAGCAGCAACTGAAAATAGAGGAAATTTCTGTGCCACCAAATGTCAGTTACGGCAGAATTGTCCGCTCCTACCTGCTGCACTATGGCTATGAAGATACATTGAATTCATTTGATGTGGCTAGTAAAAGTACTGTTCCTCCTATATACATAGCTCAAGAAAGTGGAGTTGATGAGCAGGAAATAACATATGCGTTAAATCATAGAAAAACTCTTCGGCAGCTAATCAGGAATGGAGACATTGATGTTTCATTTGGTAAATTGCGGGAATGGTATCCACAAATTGTTGAGGACAACACATCAGCTACATGCTTTCTGCTACATTGTCAAAAATTTATCGAATTAGTTCGGGTTGGAGCGCTTGAGGAGGCAGTCAGATATGGAAGAATAGAATTGTCTAGTTTTTACGACTTTCCTGTCTTTAAAGATTTAGTTCAGGACTGTGTTGCTTTGCTGGCATATGAACGGCCTCTAGAATCTTCCGTAGGCTATCTTCTAAAAGACTCGCAGCGTGAAGTTGTAGCTGACACGGTAAATGCCATGATTTTGTCCACAAATCCCAATATGAAAGAATCAAAACATTGCTTGCAGTCTTATCTGGAGAGGTTACTTAGACAGCTCACTGCTTGCTGCTTAGAGAGACGAGCACTGAATGGAGAGCAGGGAGAAGCTTTCCAACTTCAGAGATTACTTAGCAGTAGTAGAAGAGGCTAG 1407 0.4527 MSESNGNSKRPNVEDQDLGLYFLEACRGREMREREKEKEKETEEEEEEAPRELNTINSSGGFVVVSTDKLSVKYTNVNLHGHDVGVIQANKPSPTKRLIYYFEIHVKDAGVKGQISIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGEAFGPTYTSGDVVGAGINYAAQEFFFTKNGQVVGSVYKDLKGPLFPTIAVHSQNEEVHVNFGQKPFTFDLKEFEAQERMKQQLKIEEISVPPNVSYGRIVRSYLLHYGYEDTLNSFDVASKSTVPPIYIAQESGVDEQEITYALNHRKTLRQLIRNGDIDVSFGKLREWYPQIVEDNTSATCFLLHCQKFIELVRVGALEEAVRYGRIELSSFYDFPVFKDLVQDCVALLAYERPLESSVGYLLKDSQREVVADTVNAMILSTNPNMKESKHCLQSYLERLLRQLTACCLERRALNGEQGEAFQLQRLLSSSRRG* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0008 468 Gene3D - 26 235 IPR043136 -
Vra2g0008 468 CDD SPRY_RanBP_like 85 215 IPR044736 -
Vra2g0008 468 Pfam CTLH/CRA C-terminal to LisH motif domain 298 441 IPR024964 -
Vra2g0008 468 SUPERFAMILY Concanavalin A-like lectins/glucanases 57 221 IPR013320 -
Vra2g0008 468 SMART SPRY_3 97 218 IPR003877 GO:0005515
Vra2g0008 468 Pfam SPRY domain 99 216 IPR003877 GO:0005515
Vra2g0008 468 SMART ctlh 296 354 IPR006595 -
Vra2g0008 468 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 296 354 IPR006595 -
Vra2g0008 468 MobiDBLite consensus disorder prediction 31 55 - -
Vra2g0008 468 PANTHER RAN-BINDING PROTEIN M HOMOLOG 34 465 - -
Vra2g0008 468 Coils Coil 28 49 - -
Vra2g0008 468 PANTHER RAN BINDING PROTEIN 9-RELATED 34 465 - -
Vra2g0008 468 ProSiteProfiles B30.2/SPRY domain profile. 31 219 IPR001870 -
Vra2g0008 468 SMART toby_final6 350 451 IPR013144 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0008 K23334 - gmx:100797084 863.218