Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1907 ATGCGAGGCTTCGCCTGTCGAGCCTCCAACTTTCTCAAGCGCAATCTCGATAATTTACCTTATAACCCTAATTTCAACTTCTTTAGAGAATTCGCGCAATCCACCGCAATCCCCAAAAAGCAACTTAGGGTTCGTGACCACGGCTACGACAACTACATGGAAGTGGAGAAGAAAACGCGCAAGGTCCTCAAATTTCAGAGCATCATCCTCGCCGAGCCCACCCAATCGCTCCCAATCTCGCGCCTCGAAAACCTCGCGCGCCGCTTCGGTTTCACGCGCTACGAGGCTGGTGCGTTCGTCCTCAAGTTCCCGCACGTCTTCGAAATCTTTGAGCATCCAGTCCAGCGCATTCTCTTCTGCCGCCTCACCCGCAAAGCCATCCTCCAGATTCAGCAGGAGCGCCAGGCGCTCGCGGAACAGATTCCACGCGCCGTCACGCGGCTTCGGAAGCTTCTGCTGATGACGAACGAAGGCAGGCTCCGCCTCGAGCATGTGCGCATCGCACGCTCCGCCTTCGGGCTTCCCGACGACTTCGAAAACTCCGTGGTTCTGAGGTACCCTCAGTTTTTCCGTTTGATTGATGCAAAGGAAACTAGGATGAAGTACATTGAGGTTGTGGAGAGAGACCCTAGGTTATCAACTTGTGCGATTGAGGAGGTTAGGGAGAGGGAGTATAGAGAGAGAGGTGGTGATGCTGAGGATGTTAGATTTTCTTTTATCATTGATTTTCCACCTGGTTTTAAGATAGGTAAGTATTTTAGGATTGCAATGTGGAAGTGGCAGAGGCTTCCTTATTGGTCCCCGTATGAGGATGTTTCTGGGTATGATTTGAGGTCCATTGAGGCGCAGAAGAGGATGGAGAAGAGAGCTGTTGCCACCATTCATGAGTTGTTGTCGTTGACTGTGGAGAAGAAAATTACATTGGAGCGGATTGCACATTTCCGGATGGCGATGAACCTGCCCAAGAGGTTGAAGGATTTCCTGCTCCAGCACCAAGGTATTTTCTATGTCTCCACTAGGGGGAATCAGGGGAAGCTTCACACTGTTTTCCTTAGGGAGGCGTATAGAAAAGGCGAGCTTACTGAGCCGAATGAGTTGTATTTGGCACGGAGGAAGCTAGCTGAGCTTGTGCTGTTGAGTCCAAGGAAAGCCAAGGTTGATAAGGAGTTGGTTGGGTACAGGAGAAGCAGGTTAGAGGACGAAATGGGGCAGGTAACGAGGACATATGTGGAGGATGCCTGTGAAGACTTTAAGGGGGAAAATGGTGTGGGGCTGGATAAAGATGCAGAGGATGATTTGACGTCAGATATAGGTTCTGATGTTGATTTAGGAGATGAGGGTGATGATTTTATCGATAGTGCATCACTGCAAAGGACATCATAG 1383 0.5011 MRGFACRASNFLKRNLDNLPYNPNFNFFREFAQSTAIPKKQLRVRDHGYDNYMEVEKKTRKVLKFQSIILAEPTQSLPISRLENLARRFGFTRYEAGAFVLKFPHVFEIFEHPVQRILFCRLTRKAILQIQQERQALAEQIPRAVTRLRKLLLMTNEGRLRLEHVRIARSAFGLPDDFENSVVLRYPQFFRLIDAKETRMKYIEVVERDPRLSTCAIEEVREREYRERGGDAEDVRFSFIIDFPPGFKIGKYFRIAMWKWQRLPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKRLKDFLLQHQGIFYVSTRGNQGKLHTVFLREAYRKGELTEPNELYLARRKLAELVLLSPRKAKVDKELVGYRRSRLEDEMGQVTRTYVEDACEDFKGENGVGLDKDAEDDLTSDIGSDVDLGDEGDDFIDSASLQRTS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1907 460 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 23 440 IPR045040 GO:0003723
Vra1g1907 460 MobiDBLite consensus disorder prediction 421 460 - -
Vra1g1907 460 Pfam Plant organelle RNA recognition domain 44 380 IPR021099 GO:0003723
Vra1g1907 460 PANTHER PROTEIN ROOT PRIMORDIUM DEFECTIVE 1 23 440 IPR040295 -
Vra1g1907 460 MobiDBLite consensus disorder prediction 435 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1907 Vra-Chr1 36241571 36243231 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1907 - - gmx:100782167 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1907 1 36241571 36243231 Vra1g1907 1 36241571 36243231 ECH