Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1855 ATGTCTAATATGATAGAGGTGAGAGTTCCAAATCTTGATTGTGAAGGATGTGCTTCAAAACTAAAGAAAGCTCTCTTCAAACTTAAAGGAGTAGATGAGGTAGAAGTTGAAATGGAATCACAGAAAATAACAGTGAGGGGCTATGGCTTGGAGGAAAAGAAGGTTCTGAAGGCAATCAAACGTTCAGGGAAAGTGGCAGAACCATGGCCATTTCCAGGGCATGCTCATTTTTCTTCATTTTACAAGTATCCTAGTTACATTGTTAACCATTACTATGATGCATACAAAAGTGAAGCTACCAATGGAGTTCACAGTTTCTTCCACACCCCTGCTGTATATTCAGTTGCTGTGGCATCTGATGAAGCATTTGCTTCTCTCTTCAGTGATGATAACCCTCATGCTTGCACCATAATGTAA 417 0.3981 MSNMIEVRVPNLDCEGCASKLKKALFKLKGVDEVEVEMESQKITVRGYGLEEKKVLKAIKRSGKVAEPWPFPGHAHFSSFYKYPSYIVNHYYDAYKSEATNGVHSFFHTPAVYSVAVASDEAFASLFSDDNPHACTIM* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1855 138 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 31 3 138 - -
Vra1g1855 138 Gene3D - 2 66 - -
Vra1g1855 138 CDD HMA 6 67 IPR006121 GO:0046872
Vra1g1855 138 Pfam Heavy-metal-associated domain 7 64 IPR006121 GO:0046872
Vra1g1855 138 ProSiteProfiles Heavy-metal-associated domain profile. 4 68 IPR006121 GO:0046872
Vra1g1855 138 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 138 IPR045181 GO:0046872
Vra1g1855 138 SUPERFAMILY HMA, heavy metal-associated domain 4 69 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1855 Vra-Chr1 35433608 35435856 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1855 - - gmx:100802676 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1855 1 35433608 35435856 Vra1g1855 1 35433608 35435856 ECH