Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1832 ATGGGAACATCAGTGCAGGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCGTATTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAACGACCAATTCGACCCCTCACTCCTTCAACCCCTCTCCAGGGTAGCATCAACCATTGATGCTGTCTTGCTTTCACATGCTGATACACTTCACCTTGGTGCCCTCCCATATGCCATTAAGCAGCTCGGACTCTCTGCCCCAGTTTATTCAACTGAGCCTGTCTTCAGATTGGGCCTTCTCACTATGTATGACCAGTACCTTTCAAGAAAGCAAGTGTCGGAATTCGATCTGTTCACATTGGATGATATTGATTCTGCTTTCCAGAGTGTAACGAGGCTAACATATTCTCAGAATCATCATCTGTCAGGCAAAGGAGAAGGAATTGTGATTGCACCTCATGTTGCTGGACATCTTTTGGGAGGTACTGTTTGGAAAATTACAAAGGATGGTGAGGATGTCATATATGCTGTTGATTTTAATCATAGGAAAGAAAGGCATTTGAATGGAACTGCTCTTGGTTCTTTTGTGCGGCCTGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGCCAAAAAGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTAAGAGCAGGTGGCAATGTATTACTACCTGTTGACACTGCTGGACGAGTGTTGGAACTTATTCTGTTGTTGGAATCGTATTGGTCTGATGAAAACATGAACTACCCCATATACTTTCTTACATATGTTGCTTCCAGCACAATTGATTACGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTTGAAAAAACTCGTGAAAATATTTTTCTTCTGAAGTATGTTACCCTTCTGATTAACAAGACTGACCTTGACAATGCTCCAGAGGGTCCAAAGGTGGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGCTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATTCAAAAAATCTTGTGCTTTTTACTGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTCCAAGCTGATCCACCACCAAAAGCTGTCAAAGTTGTTGTGTCCAAGCGTGTTCCTTTGGTTGGGGAAGAGCTTATTGCCTACGAAGAAGAACAAGATCGAATAAAAAAAGAAGCTTTAAAAGCCAGTCTTATAAAAGAGGAAGAACTGAAAACATCTCATGGGTCTGATAATAATAATAGTGATCCAATGGTCATTGATTCTGGCAATAATCATGTACCACCAGAAGTGGCTGGTCCACGAGGTGGAGGATACCGGGATATATTTATTGATGGATTTGTTCCCCCTTCCACGAGTGTTGCTCCAATGTTTCCCTGTTATGAGAATACATCAGAATGGGATGATTTTGGTGAAGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGAATCAGATTGCAATGCACGGAGGTGGTGATATAAATGGAAAACTTGATGAAGGTGCTGCAGGTTTAATACTTGATACAAAGCCATCAAAAGTTGTATCTGATGAAAGGACTGTGCAAGTTAAGTGTGTATTGGTTTACATGGATTTTGAGGGACGTTCAGATGGAAGATCCATTAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGGTCAGCAGAAGCTACAGAGCATCTGAAGCAGCACTGCCTGAAGCATGTTTGTCCTCACGTTTATGCTCCCCAAATTGATGAGACAATTGATGTGACCTCTGATTTATGTGCTTACAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAAAAGCTGGGAGATTATGAAGTAGCTTGGGTAGATGCTGTAGTAGGGAAGACAGAAAACGACATGCTTTCTCTGCTCCCTGTTTCTGAAGCGGCTCCTCCACATAAGTCTGTTCTTGTTGGTGATTTGAAATTGGCAGATATCAAACAGTTTCTCTCTGGCAAGGGTGTTCAGGTGGAGTTTGCTGGTGGGGCTTTACGTTGTGGTGAATACGTAACTCTTCGGAAAGTTGGGGATGCAACTCAGAAGGGTGGTGGTTCTGGTGCTCAGCAAATTGTTATTGAAGGTCCTCTGTGTGAAGATTACTATAAAATTCGTGACTATCTCTATTCACAATTTTATTTGCTTTAG 2220 0.4189 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDQFDPSLLQPLSRVASTIDAVLLSHADTLHLGALPYAIKQLGLSAPVYSTEPVFRLGLLTMYDQYLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRVLELILLLESYWSDENMNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFLLKYVTLLINKTDLDNAPEGPKVVLASMASLEAGFSHDIFVEWANDSKNLVLFTERGQFATLARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQDRIKKEALKASLIKEEELKTSHGSDNNNSDPMVIDSGNNHVPPEVAGPRGGGYRDIFIDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMNQIAMHGGGDINGKLDEGAAGLILDTKPSKVVSDERTVQVKCVLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIDETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAVVGKTENDMLSLLPVSEAAPPHKSVLVGDLKLADIKQFLSGKGVQVEFAGGALRCGEYVTLRKVGDATQKGGGSGAQQIVIEGPLCEDYYKIRDYLYSQFYLL* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1832 739 Pfam Beta-Casp domain 242 365 IPR022712 -
Vra1g1832 739 SMART Beta_Casp_2 242 365 IPR022712 -
Vra1g1832 739 MobiDBLite consensus disorder prediction 414 440 - -
Vra1g1832 739 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 533 584 IPR011108 -
Vra1g1832 739 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 738 IPR027075 GO:0005847|GO:0006378|GO:0006379
Vra1g1832 739 Pfam Metallo-beta-lactamase superfamily domain 22 189 IPR001279 -
Vra1g1832 739 Pfam Cleavage and polyadenylation factor 2 C-terminal 643 736 IPR025069 -
Vra1g1832 739 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 602 IPR036866 -
Vra1g1832 739 Gene3D - 7 259 IPR036866 -
Vra1g1832 739 SMART Lactamase_B_5a 17 230 IPR001279 -
Vra1g1832 739 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1832 K14402 - gmx:100777002 1401.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1832 1 34930125 34940629 Vra1g1832 1 34930125 34940629 ECH