Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1824 ATGTCTGGCACTGCTATGGCAGTTGTGAAACCTGAGATGACATCCTACATCTGGCTTCAAACTGTGGATGGCTCTATTCATCAAGTAGAGGAAGAGGTAGCCATGTTTTGCCCTATGATTTGCCAGGAAGTACTTCAAACAGGCATGGGATCTTCCAAAACTTGTGCTATATCTCTTCCACATCATGTCAATCCTGCAATCTTTGATTTGATACTTGATTACTGTCGGTTTCACCAAGTACCAGGACATTCTAACAAGGAGCTCAAAATTTTCAACGAGAAGTTTGTACGGATAGATACAAAGAAGTTATGTGAGTTGACATCTGCTGCTGACAGCCTCCAACTGAAGCCTTTGGTTGACCTGACCAGTCGAGCCCTTGCTAGGATTATTGAAGGAAAAACTCCCGAGGAGATTCGTGAAACATTTCATTTGCCTGATGACCTGACTGAGGAAGAGAAGCTGGAGCCTCTGAGAAACGTAACTGATGATCCTCGTATTCGACTTCTAAACAGATTGTATGCTAGAAAGAGGAAAGAACTACAAGAGAGAAAGAAACTGAAGGATGTTGCGGTTGAGGAGGAACCAAAGGATGAGCGTTCAGTTGAAGATCTTCTATCATTTATTAATGGCGCAGATGGAGATATAAAGGGAACTAGAGCAAGTAAAAATAAAAAGAAGAATAGAAGGAAAGACCAGGCAAAGGATCTTTCTTCAAAAAATGCAAATGAAAACAATAAGGGGTTGAATCTTCTTCCTTCTGCATATCACAATGTCAATTTTGACAAGGCCTTAGAGGCCTCTGCAAGTAAACACTCAAGGATGCAAACCATTCCAGCTGTTAATTTTTCTCCAAAATTTGAATTTATTGATGGTGATGTCGACGATGATTTAGATCCTGCTGTGAAGGAGGAGCTTGACAGGGAAGTGGAAGATTTTGCGCGAAGATTGAATTCAGATTGGCCTGAAAGGATGCAAATTTTATCTTTGGGTCAGGACAGAAGACTGGTACCAATTTCTGTGAATGGCAATGGTTCAACGCACCTGTACACGAGTCTGTGTTGA 1062 0.4143 MSGTAMAVVKPEMTSYIWLQTVDGSIHQVEEEVAMFCPMICQEVLQTGMGSSKTCAISLPHHVNPAIFDLILDYCRFHQVPGHSNKELKIFNEKFVRIDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNVTDDPRIRLLNRLYARKRKELQERKKLKDVAVEEEPKDERSVEDLLSFINGADGDIKGTRASKNKKKNRRKDQAKDLSSKNANENNKGLNLLPSAYHNVNFDKALEASASKHSRMQTIPAVNFSPKFEFIDGDVDDDLDPAVKEELDREVEDFARRLNSDWPERMQILSLGQDRRLVPISVNGNGSTHLYTSLC* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1824 353 PANTHER SKP1 1 246 IPR016897 GO:0006511
Vra1g1824 353 SUPERFAMILY Skp1 dimerisation domain-like 89 157 IPR036296 GO:0006511
Vra1g1824 353 SUPERFAMILY POZ domain 15 79 IPR011333 -
Vra1g1824 353 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Vra1g1824 353 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Vra1g1824 353 PANTHER OS03G0107000 PROTEIN 1 246 - -
Vra1g1824 353 SMART skp1_3 14 115 IPR001232 GO:0006511
Vra1g1824 353 Gene3D Potassium Channel Kv1.1; Chain A 11 160 IPR011333 -
Vra1g1824 353 Coils Coil 169 189 - -
Vra1g1824 353 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1824 Vra-Chr1 34801153 34808613 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1824 - - gmx:100808004 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1824 1 34801153 34808613 Vra1g1824 1 34801153 34808613 ECH