Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1820 ATGCGTGGTGTTCATGTAATAATGGGAGTCAGAAATTTGGTTACTGCAAAAGATGTTAAAGAAGGAATGCTTAAAGAGATTCCTACTGCTAAACTTGATTACATGGAATTAGACCTTAGTTCAATGGCATCTGTTAGAAAGTTTGCATCAAACTTCATTTCATCTGCTCTTCCATTGAACATTCTTATAAACAATGCAGGAATATATGGAACCCCTTTCACGCTGTCTGAGGACAATATTGAACTGCAATTTGCTACTAATCATATAGGCCATTTTCTTTTAACAAATCTGTTGTTAGATACTATGAAGAAAACAACACATGAAAGTATGCGAGAAGGAAGAATTATTAATGTCACCTCCTGTGCTTATCGATTATCCTATCGTGGAGGAATCCGTTTCGATAAAATTAATGATGAATCAAGTTATAGCAAGTTTTGTGCATATGCTCAGTCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAGACGTCTTAAGGAAGATGGAGTAGATATTACTGCTAATTCTGTTCATCCAGGAGCCATTATCACCAATATTCATCGTTACTACTTCCACTCTGGACTTGCAGCTGTACTTAAGAAGTTGATAGGTTTTGCATTTAAAAATGTCGAACGGGGAGCATCAACAACATGTTATGTAGCATTGCACCCTGAAGTTAGGGGAATTAGTGGAGAGTATTTTGCAGATAATAAAATGGCGAAAGTAGGTTCAAAAGGAAGGGATATTGAGTTGGCTAAGAAACTCTGGAATTTTAGCCTGAATTTAATCAACTGA 798 0.3622 MRGVHVIMGVRNLVTAKDVKEGMLKEIPTAKLDYMELDLSSMASVRKFASNFISSALPLNILINNAGIYGTPFTLSEDNIELQFATNHIGHFLLTNLLLDTMKKTTHESMREGRIINVTSCAYRLSYRGGIRFDKINDESSYSKFCAYAQSKLANILHANELARRLKEDGVDITANSVHPGAIITNIHRYYFHSGLAAVLKKLIGFAFKNVERGASTTCYVALHPEVRGISGEYFADNKMAKVGSKGRDIELAKKLWNFSLNLIN* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1820 265 Gene3D - 1 265 - -
Vra1g1820 265 PRINTS Glucose/ribitol dehydrogenase family signature 57 68 IPR002347 -
Vra1g1820 265 PRINTS Glucose/ribitol dehydrogenase family signature 107 123 IPR002347 -
Vra1g1820 265 PRINTS Glucose/ribitol dehydrogenase family signature 148 167 IPR002347 -
Vra1g1820 265 PRINTS Glucose/ribitol dehydrogenase family signature 171 188 IPR002347 -
Vra1g1820 265 CDD retinol-DH_like_SDR_c_like 2 257 - -
Vra1g1820 265 Pfam short chain dehydrogenase 3 126 IPR002347 -
Vra1g1820 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 242 IPR036291 -
Vra1g1820 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 57 68 IPR002347 -
Vra1g1820 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 121 IPR002347 -
Vra1g1820 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 IPR002347 -
Vra1g1820 265 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 1 265 - -
Vra1g1820 265 PANTHER RETINOL DEHYDROGENASE 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1820 Vra-Chr1 34675755 34684356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1820 35 238 Acyl Lipid Metabolism Gene Families AT1G63380 26.291 2.67e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1820 - - vra:111240511 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1820 1 34675755 34684356 Vra1g1820 1 34675755 34684356 ECH