Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1815 ATGTGGCCATTCAAAAGAAGAGGAGTTTCTGGGTTTTCATGGTCATCCACTGCAGAAGAAGTTACTCTCGGAATCGACGCCACTGCTCTTACTGCTATTGTTACTGGTGCATCAAGTGGTATAGGTGCTGAGACAGCTCGTGTTCTTGCATTGCGTGGTGTGCATGTCATAATGGGAGTGATTGATATGATGGATGCTTTTAATGTTAAGGATTCAATACTTAAGCAATTTCCCACTGCTAAAGTTGATGTCATGAAGTTGGATCTAAGTTCAATGGCTTCTGTTCATCATTTTGCTGATGAGTTTAATTCAACTTCTCTTCCATTGAATATTTTGATAAACAATGCAGGGATTTGTGCATCCCCTTTCATGCTATCCAAGGACAACATTGAACTTCAATTTGCTATAAATTATTTAGGTCATTTTCTTCTAACAAATCTGTTGTTGGAAAATATGAAGAAAACAGCAAGAGAAAGTAAGATACAAGGAAGAATTATTAATGTCTCCTCCATGGGTCATAGATTTACTTATCCTAACGGAATCCTTTTTGACAAACTTAACGATCCATCAAGTTACAACAATTCACGTGCCTATGGACAATCAAAGCTTGCAAACATTTTACATGCCAATGAACTTGCAAGACGTTTCAAGGAAGATGGAGTAGATATTACTGCGAATTCTCTTCATCCAGGATTTATAACCAACACAAATATATATCTTCAGAATCGATTTCTCACAGGTCTAAGGAATATATTAAGTTCATTTCTACCTCGTTGCATAGAGCGATTTGTGTTNAAAAATGTGGAGCAAGGAAGGGACATGGATTTGGCTAAGAAGCTATGGGATTTTAGCATGAATTTGACCATCAAAAATTAA 876 0.3676 MWPFKRRGVSGFSWSSTAEEVTLGIDATALTAIVTGASSGIGAETARVLALRGVHVIMGVIDMMDAFNVKDSILKQFPTAKVDVMKLDLSSMASVHHFADEFNSTSLPLNILINNAGICASPFMLSKDNIELQFAINYLGHFLLTNLLLENMKKTARESKIQGRIINVSSMGHRFTYPNGILFDKLNDPSSYNNSRAYGQSKLANILHANELARRFKEDGVDITANSLHPGFITNTNIYLQNRFLTGLRNILSSFLPRCIERFVXKNVEQGRDMDLAKKLWDFSMNLTIKN* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1815 291 CDD retinol-DH_like_SDR_c_like 31 262 - -
Vra1g1815 291 Pfam short chain dehydrogenase 31 179 IPR002347 -
Vra1g1815 291 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Vra1g1815 291 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Vra1g1815 291 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Vra1g1815 291 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vra1g1815 291 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vra1g1815 291 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vra1g1815 291 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vra1g1815 291 Gene3D - 26 290 - -
Vra1g1815 291 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 271 - -
Vra1g1815 291 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 264 288 - -
Vra1g1815 291 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 239 IPR036291 -
Vra1g1815 291 PANTHER RETINOL DEHYDROGENASE 264 288 - -
Vra1g1815 291 PANTHER RETINOL DEHYDROGENASE 2 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1815 Vra-Chr1 34590430 34613496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1815 33 264 Acyl Lipid Metabolism Gene Families AT3G55290 28.807 3.06e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1815 - K19329 gmx:100776100 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1815 1 34590430 34613496 Vra1g1815 1 34590430 34613496 ECH