Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0908 ATGAGTTTCGCGGCGTACAAGATGATGCAGTGGTCCACTGGAATCGACAACTGCGCCGCCGGCTTCCTCACGCACTCACGTGCTGACTCCGTTCCGCTCCAGGCCGACGACCTAGACGCCGAGTGGTCCTCCCGCCCTAGCCGCGTCGGCCCCCTCCCAAACCTCGTCGTCACCGCCGCCAACGTCCTCGAGGTCTACGCCGTACGCATCCAAGAGGACCAGCCGACCAAGGCCACCGACCCCCGCCGCGGTACTCTCCTTGATGGAATCGAGGGAGCCTCACTTGAGCTCGTGTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTGTTGAGCATTGGAGGTGGTGATGCTTCTAGGAAGAGAGACTCTATCATCTTAACTTTTGCAGATGCAAAGATTTCAGTTCTCGAGTATGATGATTCTATTCACGGACTTCGAACAAGTTCTTTACATTGTTTTGAGGGTCCAGAGTGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCGGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGGGCTCTTGTATATGATTTGCAAATGATAATACTAAAGGCCACTCAGGCTGGTTCTGGTTTAGTTGGGGATGATGATGCCTTGGGATTTTCAGGAGCAGTTGCTGCCCGAATTGAGTCATCTTATATGATAAACCTCCGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTCATGGCTACATCGAACCTGTAATGGTTATTTTACATGAACGTGAACTCACTTGGGCTGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGTACAACCTTAAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTCCCCCACGATGCATACAAGCTTCTTGCTGTGCCCTCGCCAATAGGTGGTGTTCTTGTAATAGGTGCTAACACTGTTCATTATCACAGTCAGTCTGCTTCTTGTTCATTGGCCTTGAACAGCTATGCTGTTTCACCTGACAATAGTCAAGAGATACCGAGATCAAGTTTTAACGTGGAGCTTGATTCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGTTGTCTACAAAAACTGGCGAACTGCTATTGCTTACACTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACGACCATTGGGAATTGTCTATTTTTTCTCGCCAGTCGGTTAGGGGATAGTATGTTGGTGCAATTTTCTTGTGGATCTGGTGGTTCATTGTTGTCATCCAATTTAAAAGAAGAGGTCGGTGATATTGAAGTGGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATACTTTGCAAGACATGGTTAGTGGTGAAGAGCTCTCCTTGTTTGGATCTGCTCCAAATAGAACAGAGTCAGCTCAGAAGTCCTTCTCGTTTGCTGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCGTATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAACTGGTGTGCTGTTCTGGTCATGGAAAAAATGGTTCTCTGTGTGTTCTGCGGCAATCAATTCGTCCAGAAGTGATTACTGAGGTTGAACTTCCCGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGTTCTCATAATACTGATTCTTCTAAGCTGGCTGATGATGATGATGAGTATCATGCCTATCTTATTATTAGTTTGGAGGCTCGTACAATGGTACTAGAAACAGCCGATCTTCTGAGTGAGGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCTGCGGGAAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGTGGGGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAACCTTTGGAGCTTCAAATTCAGAATCCGGTTCTGCTTCTGAGAGTGCTATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTGTTCGTCTTCTGATTGGAGATCCTATTACCTGCACAATTTCTGTCACTTCACCAGCTTCATTCGAGAGTACCAAGGGATCAGTTTCTTCATGCACACTGTACCATGATAAAGGACCTGAGCCTTGGCTGAGGAAGACTAGTACTGATGCGTGGCTTTCTACCGGTGTTGGTGAGGCTATTGATGGTACTGATGGTGCAGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGCAACCTTGAAATATTTGATGTCCCCAATTTCAATTGTGTCTTTTCTGTGGAAACTTTCATGTCTGGAAAAAGCCATCTTGTTGATGCTCTGATGAAAGAAGTACTAAAAGATTCTAAAATGGGGGATAGAGATGGAGTGGTCAGCCAAGGGAGGAAGGAAAATGTACCAGATATGAAGGTTGTAGAGTTGGCTATGCAGAGATGGTCTGGGCAACATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTATCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCAGCATCAGCGGGAGGATCCGTTGGCCTTGGCACTACCAATGTTTCCAGGCTCAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATTCCAGGGAGGAGACATCTAATGGATCACCTCGTCAACAAATTACTATTTTTAAGAATATTGGTAATTATCAAGGATTCTTCTTATCTGGGTCAAGACCAGCTTGGGTCATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTACTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGTTCAAACTATGACAGCCACTGGCCTGTCCAAAAAATTCCACTAAAAGCCACTCCACACCAAGTAACATATTTTGCTGAGAAGAATTTATATCCACTTATTGTCTCGTTTCCAGTTCTTAAGCCATTAAATCAAGTTATTTCATTGGTTGACCAAGATGTCAACCATCAGAATGAGGGTCAGAATATGAATTCTGATGAGCAAAATCGCTTTTATCCTATTGATGAATTTGAGGTTCGAATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAAGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTCACTGTGAGGATGGTTACGCTGCTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGGACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGCATCCTCCTTTTTTCTTTGGGGAAAAATACTGATAATTCACAATCTCTGGTTTCAGAGGTGTATTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAGGGCCATCTATTAATAGCGTCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCACCGCCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATAGGCGACATCCATAAAAGCATATACTTTCTCAGTTGGAAAGAGCAGGGTGCTCAATTGAGTTTATTAGCCAAGGATTTTGCTTCTCTCGATTGTTTTGCAACAGAATTTTTGATTGATGGAAGTACTCTTAGTCTCATGGTTTCAGATGATAAAAAAAATATCCAGATTTTTTACTATGCGCCAAAGATGTCCGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCTCATGTGACTAAATTCTTAAGATTGCAAATGCTATCCACTTCGGATAGAGCTGGTTCAGCTCCAGGCTCAGATAAAACAAATCGTTTTGCATTATTATTTGGGACCTTGGATGGCAGTATTGGCTGCATTGCCCCTCTTGATGAAATCACATTTCGTAGACTCCAGTCTTTGCAGAGAAAACTTGTTGATGCTGTAGCCCATGTTGCTGGCCTGAACCCCAGAGCTTTCAGACAATTTCGGTCAAATGGAAAGGCTCATAAACCTGGCCCTGACAGTATAGTTGACTGTGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCATCAGGTTGGGACAACTCGATCACAAATTCTCTCAAATCTAAGTGATCTGTCTCTTGGAACAAGCTTCTTGTAA 4338 0.4313 MSFAAYKMMQWSTGIDNCAAGFLTHSRADSVPLQADDLDAEWSSRPSRVGPLPNLVVTAANVLEVYAVRIQEDQPTKATDPRRGTLLDGIEGASLELVCHYRLHGNVETMAVLSIGGGDASRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGALVYDLQMIILKATQAGSGLVGDDDALGFSGAVAARIESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTVHYHSQSASCSLALNSYAVSPDNSQEIPRSSFNVELDSANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGNCLFFLASRLGDSMLVQFSCGSGGSLLSSNLKEEVGDIEVDAPSKRLRRSPSDTLQDMVSGEELSLFGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNTDSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVTFGASNSESGSASESAIALSVSIADPFVLLRMSDGSVRLLIGDPITCTISVTSPASFESTKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDVPNFNCVFSVETFMSGKSHLVDALMKEVLKDSKMGDRDGVVSQGRKENVPDMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSASAGGSVGLGTTNVSRLRNLRFVRVPLDAYSREETSNGSPRQQITIFKNIGNYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSHWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDVNHQNEGQNMNSDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNSQSLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFASLDCFATEFLIDGSTLSLMVSDDKKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSAPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVAHVAGLNPRAFRQFRSNGKAHKPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLSDLSLGTSFL* 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0908 1445 Pfam CPSF A subunit region 1078 1410 IPR004871 GO:0003676|GO:0005634
Vra1g0908 1445 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 125 691 IPR018846 -
Vra1g0908 1445 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1436 - -
Vra1g0908 1445 Gene3D - 967 1352 IPR015943 GO:0005515
Vra1g0908 1445 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1436 - -
Vra1g0908 1445 Gene3D - 51 438 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0908 Vra-Chr1 10572982 10592345 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0908 K14401 - gmx:100785543 2701.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0908 1 10572982 10592345 Vra1g0908 1 10572982 10592345 ECH