Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0680 ATGTTATGTTGGATCTGTTCTTATATACGTGTTGTTATTCAATCTCATCACTTCAGTCACCTTCACACTCTTTTCCTCTCTCTCTCTTCAATTCCAATGGCGGATCAGAGCCCCAAACCAGAGACCTTCGAGCTCAGCAATGGCAGCATGAAGATTCTCCTCACCAATCTCGGATGCACCATCATCTCCTTATCTGTTCCCGGAAAAGATGGGGTGTTATCCGACGTCGTTCTCGGCCTCGACTCTGTTGAATCCTATGAGAAAGGTCTTTCTCCATATTTTGGCTGCATTGTGGGTCGGGTTGCAAACCGAATCAAGGATGGCAAGTTTACACTTGATGGAGTTCAGTACTCTTTGCCTCTGAACAAACCCCCAAACAGTCTCCATGGTGGAAATGTTGGGTTTGATAAGAGGGTATGGGAGGTAGTTGAACATAAAAAAGGAGAAACTCCTTCAATCACTTTTAAGTATCACAGTCAGGATGGAGAAGAAGGTTATCCTGGGGATATCACTGTTACAGCCACATACACGCTCACCTCAAACACAACTCTAAGGCTTGACATGGAAGGAGTGCCAAAGGACAAACCCACCATAATTAACTTAGCTCAGCACACCTACTGGAACTTAGCTGGTCACAACTCAGGGAATGTACTTGACCATTCAATTCAGATATGGGCTAATAATATCACTCCTGTAGATGAGAATACTGTGCCAACAGGTGAAATCATGGCAGTGAAGGGTACCCCTTTTGATTTTACATCTGAGAAAAGAATAGGGAACAATATTAGTGAAGTTGGATTGGGATATGACCACAATTTTGTGCTGGATTGTGGAGAAGAGAAAGATGGTTTGAGGCATGTTGCAAAAGTGAGGGATCCATCAAGTTCAAGAGTACTTAACTTGTGGACAACTGCCCCTGGTGTGCAATTTTACACTGGAAACTATGTTAATGGTGTTAAAGGAAAAGGAGGTGCCATATATGAAAAACATGCAGGGTTATGTCTGGAGACACAAGGATTCCCTAATGCTATAAACCAACCAAATTTTCCATCTGTTGTGGTTCGTCCGGGAGAGAAGTATAGACACACGATGTTGTATGAGTTTTCAATTGAGTGA 1116 0.4292 MLCWICSYIRVVIQSHHFSHLHTLFLSLSSIPMADQSPKPETFELSNGSMKILLTNLGCTIISLSVPGKDGVLSDVVLGLDSVESYEKGLSPYFGCIVGRVANRIKDGKFTLDGVQYSLPLNKPPNSLHGGNVGFDKRVWEVVEHKKGETPSITFKYHSQDGEEGYPGDITVTATYTLTSNTTLRLDMEGVPKDKPTIINLAQHTYWNLAGHNSGNVLDHSIQIWANNITPVDENTVPTGEIMAVKGTPFDFTSEKRIGNNISEVGLGYDHNFVLDCGEEKDGLRHVAKVRDPSSSRVLNLWTTAPGVQFYTGNYVNGVKGKGGAIYEKHAGLCLETQGFPNAINQPNFPSVVVRPGEKYRHTMLYEFSIE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0680 371 PANTHER ALDOSE 1-EPIMERASE 41 370 - -
Vra1g0680 371 Pfam Aldose 1-epimerase 42 366 IPR008183 GO:0005975|GO:0016853
Vra1g0680 371 Gene3D - 29 371 IPR014718 GO:0030246
Vra1g0680 371 PANTHER ALDOSE-1-EPIMERASE 41 370 - -
Vra1g0680 371 PIRSF GALM 29 371 IPR015443 GO:0016853|GO:0019318
Vra1g0680 371 CDD galactose_mutarotase_like 43 368 - -
Vra1g0680 371 SUPERFAMILY Galactose mutarotase-like 38 369 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0680 Vra-Chr1 8020506 8023351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0680 39 369 Miscellaneous Gene Families AT3G47800 50.755 4.29e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0680 K01785 - gmx:100776238 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0680 1 8020506 8023351 Vra1g0680 1 8020506 8023351 ECH