Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0652 ATGTCGCTCCACGGCAGCGACCGCCGCGACACGTCGAGCGCCGGCGGAAACGGCATGGTGGCGGCGGCGAGCCTGAGGCTGCGGCTGAACCCTAACAAGGAGCACAAGCCAGATGGCTACGAGGACCTGCAGTTGGATTTCAGCCCTAACATCTTCAGCTCCTTGGAGAGGTACCTCCCTCCGAGCATGCTCAACGTGCCTCGTGACGATAAGGCCAAGTTCATGCGCGAGATTCTGCTCAAGTATCTACCCCTTGGGGAACGCAGCAGATCTCAAAAGCATAGAGAATACAGACAGAAGATAATAGAAAATTATCAGCCTCTGCATCGGGAGTTGTACTCTGTGAATTCTGCTACATTCTTCGTTCCCTCATTTCTGAGAGCAATTAATGATAATACTGAGCAAAGCTTTAGAAGTATAATGTCTGAGCCCTCTCCTGGCATTTTTATATTTGACATATTTCAGACCAACTTTTGTGAGTTATTGCTATCTGAGATTGAAAATTTTGAGAAGTGGGTGACTGAAACAAAGTTTCGGATCATGCGTCCCAATACAATGAATAAATATGGTGCTGTACTTGATGATTTTGGACTTGAAACAATGCTTGACAAGCTTATGGAAGGTTTTATTCGTCCTTTATCCAGAGTCTTATTTGCGGAAGTTGGTGGGGCAACCCTGGATTCTCATCATGGTTTTGTTGTAGAATATGGTAAAGATAGAGATGTTGACTTGGGTTTCCATGTGGATGACTCAGAAGTAACCTTGAATGTTTGTTTGGGTAAGCAATTTTCTGGAGGGGAATTGTTTTTCCGGGGCATACGATGTGAGAAACATGTAAATACTGGAACTCATTCAGAGGAGATCTTTGATTATTCTCATGTTCCTGGACGAGCTGTGCTTCATCGTGGTCGACATCGCCATGGTGCTAGAGCTACAACATCCGGCAATCGGGTCAACCTACTTCTGTGGTGCAGAAGTTCTGTCTTTAGGGAGATGAAACGGTATCAAAAAGATTTCTCCAGCTGGTGTGGCGAGTGCAGTCGTGAGAAAAAGGAAAGGCAACGCTCAACAATTGCTGCTACCAAATTGTGTGGTGGATTTGGAGATGGAGGAAACACAAAATCTTTGACAACGATGGGTGGAATACAAAGAAAATCATGA 1161 0.4531 MSLHGSDRRDTSSAGGNGMVAAASLRLRLNPNKEHKPDGYEDLQLDFSPNIFSSLERYLPPSMLNVPRDDKAKFMREILLKYLPLGERSRSQKHREYRQKIIENYQPLHRELYSVNSATFFVPSFLRAINDNTEQSFRSIMSEPSPGIFIFDIFQTNFCELLLSEIENFEKWVTETKFRIMRPNTMNKYGAVLDDFGLETMLDKLMEGFIRPLSRVLFAEVGGATLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFSGGELFFRGIRCEKHVNTGTHSEEIFDYSHVPGRAVLHRGRHRHGARATTSGNRVNLLLWCRSSVFREMKRYQKDFSSWCGECSREKKERQRSTIAATKLCGGFGDGGNTKSLTTMGGIQRKS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0652 386 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 16 362 - -
Vra1g0652 386 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 16 362 - -
Vra1g0652 386 Gene3D q2cbj1_9rhob like domain 146 326 - -
Vra1g0652 386 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 227 326 IPR005123 -
Vra1g0652 386 SMART p4hc 146 325 IPR006620 GO:0005506|GO:0016705|GO:0031418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0652 Vra-Chr1 7676276 7684403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0652 - - gmx:100816390 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0652 1 7676276 7684403 Vra1g0652 1 7676276 7684403 ECH