Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0649 ATGGGGATCCCTGGATTGAGCGATCAGAATAATGGGCAACAAAGATTAGGCATAACTGAGCCTATTTCATTGGCTGGACCAACTGAGGATGATTTGATCAAGACGCGTGAACTTGAGAAGTACTTGCAAGGTGTTGGATTGTACGAGAGTCAGGAAGAGGCTGTTGGTAGGGAAGAAGTTCTTGGCAGGCTGGACCAGATTGTGAAGATTTGGGTCAAGAACATCAGCCGAGGAAAGGGGTTCAACGAACAACTGGTTCAAGAAGCAAATGCCAAGATTTTCACCTTCGGCTCTTATCGGTTAGGGGTGCATGGCCCTGGAGCTGACATAGATACTCTTTGTGTGGGACCTAGACATGCAAGCAGAGATGAAGACTTCTTTGGTGAGCTGAGGAAAATGCTATCTGAAATGCAAGAAGTAACAGAATTGCACCCTGTGCCCGATGCTCACGTCCCTGTGATGAAATTCAAGTTTAATGGTGTTTCAGTTGATCTCTTGTATGCAAGATTAGCTTTGTGGGTTATTCCTGAAGACTTAGATATATCACAGGAATCAATATTACAAAATGTTGATGAGCAAACTGTTCTTAGTCTTAATGGTTGTAGAGTAACTGATCAGGTCTTGCGATTGGTTCCGAATATTCAGACCTTTCGTACAACATTGAGATGCATGAGGTTTTGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTGCTGGTTTTCTTGGTGGTATAAATCTGGCATTGCTTGTTGCTCGAATATGCCAGTTATATCCTAATGCTCTACCTAATATGTTAGTGTCTCGTTTCTTTCGGGTGTATACTCAATGGCGATGGCCAAATCCAGTCATGCTTTGCGCTATTGAAGAAGGATCTCTTGGACTACCTGTTTGGGATCCTAGAAGAAATCCCAAGGATAGATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAATTCTACTTACAATGTGACATCAAGTACATTACGTGTTATGTCAGATGAGTTTCAGAGGGGGAGTGAAATATGTGAGGCTATGGAGGCTAGCAAGGCGGACTGGAATGCTCTTTTTGAGCCTTATCCCTTTTTTGAATCTTACAAGAATTATCTACAGATAGACATAACTGCAGAGAATGCAGATGACCTTAGACAATGGAAAGGCTGGGTTGAGTCTCGTCTCCGCCAATTAACATTGAAGATTGAGAGGCACACTTATGGCATGCTTCAATGTCATCCACATCCTGGTGAATTCTCAGACAAGTCTAGACCTTTTCATCACTGTTACTTCATGGGTCTGCAGCGTAAGCAAGGAGTTCCAGTGAATGAAGGTGAACAGTTTGATATAAGGCTAACTGTTGAAGAATTCAAGCATTCTGTCAATGCTTACACACTATGGAAACCTGGAATGGATATTCATGTGTCCCATGTGAAACGCCGGAACATACCTGCCTACATATTCCCTGGTGGTGTCCGGCCTTCAGGCCCATCAAAAGTAACTGCTGAAAATAAACAAAGTTCTAAACTAAGGGCTTCTGGTCACGGTCAAGCCGAAAAATCTCAAGGAGGTAAAGGAGTTGCTGTTGGAGCGGATGATGTGAAAAAGAGAAGGAGATCAGAGGACGACATGGATAATAGTTCAAAGAATTCCAAGTCCCCTGTATCTTTACCTCCCCCTAGCAGGGAAGTTAATGAAGATATGACTCCTATTACATGGGATGAATCAGAAGTCAATAGTATTGACGGACAAAAGAGCAAGAAACTTTGTCTGACATCTCCAGGGGAGATTCCTCCTGGGGATAGCGGGACCAATGGATCTGTGGCAAGCAACCAACCAGTGAACCCTATACTTGCTGCTACTGATATATCCAGTTCTAAAGAAGAAGAAAAACTAGCCATTGAAAAGATTATGTCAGGGCCATATGATGCACATCAAGCCTTTCCAGAAGAACCTGAAGAGCTTGAAGATGACACTCAGTATAGAAATCAAGTCAAGGATACTGCTGGGAGCTTGAAAAACATTACTGAATCTTTAGCCTTAAAGCCTGCAGTGGCAGAAGAGCCAGTTGTTTGTGTGGAAACTACTTGCTCTACTAGTTTATGCTCCAATGAGGGCTCGGAGGAGCTTGAGTCTGCTGAGCTAACAGCACCATTGTTAACTGTGCCTCCTGCACCTGCACCCCTGAAGAAGCCTCTTATCAGGTTGAACTTCACCTCTTTGGTAAAAGCTGCTGACAAGAGTTCTTAG 2250 0.4329 MGIPGLSDQNNGQQRLGITEPISLAGPTEDDLIKTRELEKYLQGVGLYESQEEAVGREEVLGRLDQIVKIWVKNISRGKGFNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHASRDEDFFGELRKMLSEMQEVTELHPVPDAHVPVMKFKFNGVSVDLLYARLALWVIPEDLDISQESILQNVDEQTVLSLNGCRVTDQVLRLVPNIQTFRTTLRCMRFWAKRRGVYSNVAGFLGGINLALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLPVWDPRRNPKDRYHLMPIITPAYPCMNSTYNVTSSTLRVMSDEFQRGSEICEAMEASKADWNALFEPYPFFESYKNYLQIDITAENADDLRQWKGWVESRLRQLTLKIERHTYGMLQCHPHPGEFSDKSRPFHHCYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNAYTLWKPGMDIHVSHVKRRNIPAYIFPGGVRPSGPSKVTAENKQSSKLRASGHGQAEKSQGGKGVAVGADDVKKRRRSEDDMDNSSKNSKSPVSLPPPSREVNEDMTPITWDESEVNSIDGQKSKKLCLTSPGEIPPGDSGTNGSVASNQPVNPILAATDISSSKEEEKLAIEKIMSGPYDAHQAFPEEPEELEDDTQYRNQVKDTAGSLKNITESLALKPAVAEEPVVCVETTCSTSLCSNEGSEELESAELTAPLLTVPPAPAPLKKPLIRLNFTSLVKAADKSS* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0649 749 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Vra1g0649 749 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vra1g0649 749 MobiDBLite consensus disorder prediction 598 613 - -
Vra1g0649 749 MobiDBLite consensus disorder prediction 1 18 - -
Vra1g0649 749 CDD NT_PAP_TUTase 57 211 - -
Vra1g0649 749 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Vra1g0649 749 Pfam Poly(A) polymerase predicted RNA binding domain 364 423 IPR007010 GO:0003723|GO:0043631
Vra1g0649 749 MobiDBLite consensus disorder prediction 1 21 - -
Vra1g0649 749 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Vra1g0649 749 PANTHER POLY A POLYMERASE 1 688 - -
Vra1g0649 749 MobiDBLite consensus disorder prediction 572 587 - -
Vra1g0649 749 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Vra1g0649 749 Gene3D - 17 359 - -
Vra1g0649 749 MobiDBLite consensus disorder prediction 499 515 - -
Vra1g0649 749 MobiDBLite consensus disorder prediction 530 548 - -
Vra1g0649 749 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Vra1g0649 749 MobiDBLite consensus disorder prediction 488 613 - -
Vra1g0649 749 Pfam Nucleotidyltransferase domain 82 170 IPR002934 GO:0016779
Vra1g0649 749 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0649 Vra-Chr1 7648707 7655253 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0649 K14376 - gmx:100816915 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0649 1 7648707 7655253 Vra1g0649 1 7648707 7655253 ECH