Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0638 ATGAAGACAGCACACATTGCTTTGTGCACTTTGGTGGTGCTGCTTGTGGCTGAAGTTCAAGTGTCAATGGCAGTAACATGCAGCCCAGTACAGCTGAGTTCATGTGTGAGTGCAATAACCTCTTCAACTCCTCCATCAAAACTATGCTGCTCCAAGATCAAGGAACAGAAACCATGCCTTTGCCAATACGTCAAGAACCCCAATCTGAAGAAGTTTGTTGACTCACCTAATGCAAGGAAAGTTGCTAGCACTTGTGGAACTCCCTTCCCAAGGTGCTAA 279 0.4588 MKTAHIALCTLVVLLVAEVQVSMAVTCSPVQLSSCVSAITSSTPPSKLCCSKIKEQKPCLCQYVKNPNLKKFVDSPNARKVASTCGTPFPRC* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0638 92 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 1 92 - -
Vra1g0638 92 Gene3D - 25 92 IPR036312 -
Vra1g0638 92 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 92 IPR036312 -
Vra1g0638 92 SMART aai_6 27 92 IPR016140 -
Vra1g0638 92 Pfam Probable lipid transfer 21 87 IPR016140 -
Vra1g0638 92 CDD nsLTP2 27 92 IPR033872 GO:0006869
Vra1g0638 92 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 1 92 IPR033872 GO:0006869
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0638 Vra-Chr1 7393156 7393839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0638 1 92 Acyl Lipid Metabolism Gene Families AT3G18280 56.989 2.32e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0638 - - tcc:108661085 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0638 1 7393156 7393839 Vra1g0638 1 7393156 7393839 ECH