Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0636 ATGACTTTGAAAACCCCAGGAACACCAGTTTCGAAGATAGTTAGGACTCCAGTATCAACTCCAGGAGGGTCAAGAGCTAAAGAAGAGAAGATTGTGGTCACAGTAAGGTTAAGACCTTTGAACAAAAGGGAGCAATTGGCTAAAGATCAGGTGGCATGGGACTGCATCAATGATTACACTGTTGTGTATAAACCACCTGCACAAGAACGGGCTGCCCAACCGATGTCATTTACTTTTGATAAAGTTTTTGGTCCTGCTTCAGTAACAGAGGCAGTATACGAAGAAGTAAAGAATGTGGCATTATCTGCATTAACAGGCATTAACGCTACAGTTTTTGCTTATGGACAAACTAGCAGTGGAAAAACATATACAATGAGAGGCATAACAGAGAGGGCTGTCAATGATATCTACAATCATATCTTGAATTCTCCTGAAAGAGATTTCACTATAAAAATATCTGGACTAGAGATATACAATGAGAATGTAAGGGACTTGTTAAATTCAGAATCTGGTCGCAGTTTGAAGCTTCTTGATGATCCTGAGAAAGGTACTATGGTTGAGAAACTAGTGGAAGAGACAGTAAAAGATGACAAGCATTTGAGACATTTGATCTCCATCTGTGAAGCTCAAAGGCAGGTTGGCGAAACTGCTCTAAATGATAACAGCTCGCGGTCTCACCAGATAATAAGATTGACAATTCAAAGTACTCTTCGTGAAAATACAGATTGTGTGAAATCTTTTGTCGCAACCTTGAACTTTGTTGATCTTGCTGGAAGTGAGAGGGCTTCACAGACACACGCAGATGGCACTAGGCTGAAAGAAGGCTGCCATATTAACCTTAGCTTGATGACTCTTACAACTGTTATAAGGAAGCTCAGTGTTGGAAAAAGAAGTGGACATATACCTTATAGGAATTCAAAGCTTACACGTATATTGCAACATTCCCTTGGTGGGAATGCTCGCACTGCCATTATTTGTACTTTAAGTCCTGCACTGAGCCATATGGAGCAATCACGAAACACTCTCTTGTTTGCTACCCGGGCAAAGGAAGTAACAAATAGCGCCCAAGTTAACATGGTTGTATCAGACAAACAACTTGTTAAACATTTACAAAAGGAAGTTGCAAGGCTGGAGGCAGTGTTGCGCACTCCCGATCCTTCAAATGAAAAGGATTGGAAAATTCAACAGATGGAAATGGAAATTGAAGAGCTGAAACGCCAGAGAGATCTTGCACAAACTCAGGTGGATGAATTACGCAGAAAGCTTCAGGATGACCCAAAGGTCTCCAACCCAGTTGAATCACCACATCTCCCAGTCAAGAAGTGCCTCTCATTCACCGGTGCACTATCATCTTTTAAACCAGAGCCAGGATGTGAGAACGTAAGAAGATCAGCATTAAGACAGTCCTTGAGGCAGTCGTCTACTGCTCCTTTTACCCTTATGCATGAAATTCGAAAGCTTGAGCATCTCCAAGAGCAGCTAGGCGAAGAAGCCAATAGAGCCTTGGAAGTATTACAAAAGGAAGTGGCATGTCATAGATTAGGTAACCAAGATGCAGCTGAGACAATTGCAAAACTGCAAGCAGAAATAAGGGAAATGCGTTCTGTCAGGTCAACAACACCAAAGGAGGTTGAAGTTGGTTGCATGGTTTCTGTCAACAAGAGTGTCAGTGCTAATCTCAAGGAGGAGATTACCCGACTTCATTCACAAGGCAGCACCATTGCAAATCTTGAACAGCAGCTTGAAAATGTTCAGAGGTCCATAGACAAGTTGGTGATGTCTCTCCCGAATAACTTTCAACATTCACCCAATGAAGCCTCCCCTAAGCATAAAAAGGAACACAGGAGGAAAAAGTTGCTTCCTTTGTCTTCAAGCAATGCTGCCAATCGCCAAAATTTCCTAAGATCTCCCTGCTCACCATTATCTATTACACAGCAAGTTTTGGAACCAGATGTTGAAAATAAAGCTCCCGAGAATGATGATATTATTTCAATTGATATGCCTGAGTCTGAGAAGGAGACTCCAACAAAGAGTGAAGAAGCTGGAGATGTTTCATCGAAGGAAAACACTCCCGTTTATCGACGTTCTAGTTCAGTTAACGTGAAGAAAATGCAGAAAATGTTTCAGAATGCAGCAGAGGAGAATGTAAGAAGTATAAGAGCGTATGTGACAGAATTGAAAGAACGTGTGGCGAAACTGCAGTACCAAAAGCAGTTACTTGTTTGCCAGGTGCTTGAACTTGAAGCAAACGAAGCAAATGGTCACAATATAGACAACGAAGAGTACCCATGTGAACAGGAGGAACCCCAGGTCCCGTGGCAGATAACATTTAAAGAGCAACGACAGCTGATCCTTGAATTATGGGATCTATGTTATGTCTCCATCATCCATAGGACCCAGTTTTATTTGTTATTCAAGGGAGATCCAGCTGATCAAATATACATGGAAGTAGAACTAAGGCGTTTGACATGGTTGCAACAACAACTAGCAGAACATGGGAATGCAAGCCCAGCTCCTCATGCTGGGGATGAGCATACAACTATCTCATTGTCATCAAGTATGAGAGCTTTGAAACGAGAAAGAGAGTTTCTGGCCAAGAGACTGACATCACGTTTGTCGTTGGAGGAGAGGGAAGTATTGTATATGAAATGGGATGTTCCTCTTGATGGGAAGCAGAGGAGGATGCAATTTATCTGCAAACTCTGGACTGATCCTCATGATCCTATCCATGTACAGGAGAGTGCTGAAATAGTTGCAAAGCTTGTGGGATTTCGAACAGGAGGGAACATGTCAAAGGAAATGTTTGAACTGAACTTCGTGCTTCCATCCGACAAGAGGCCATGGTTAATGGGCTGGAATCCCATTACAAACTTTCTTAATTTGTGA 2886 0.4213 MTLKTPGTPVSKIVRTPVSTPGGSRAKEEKIVVTVRLRPLNKREQLAKDQVAWDCINDYTVVYKPPAQERAAQPMSFTFDKVFGPASVTEAVYEEVKNVALSALTGINATVFAYGQTSSGKTYTMRGITERAVNDIYNHILNSPERDFTIKISGLEIYNENVRDLLNSESGRSLKLLDDPEKGTMVEKLVEETVKDDKHLRHLISICEAQRQVGETALNDNSSRSHQIIRLTIQSTLRENTDCVKSFVATLNFVDLAGSERASQTHADGTRLKEGCHINLSLMTLTTVIRKLSVGKRSGHIPYRNSKLTRILQHSLGGNARTAIICTLSPALSHMEQSRNTLLFATRAKEVTNSAQVNMVVSDKQLVKHLQKEVARLEAVLRTPDPSNEKDWKIQQMEMEIEELKRQRDLAQTQVDELRRKLQDDPKVSNPVESPHLPVKKCLSFTGALSSFKPEPGCENVRRSALRQSLRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSTTPKEVEVGCMVSVNKSVSANLKEEITRLHSQGSTIANLEQQLENVQRSIDKLVMSLPNNFQHSPNEASPKHKKEHRRKKLLPLSSSNAANRQNFLRSPCSPLSITQQVLEPDVENKAPENDDIISIDMPESEKETPTKSEEAGDVSSKENTPVYRRSSSVNVKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEANGHNIDNEEYPCEQEEPQVPWQITFKEQRQLILELWDLCYVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQQLAEHGNASPAPHAGDEHTTISLSSSMRALKREREFLAKRLTSRLSLEEREVLYMKWDVPLDGKQRRMQFICKLWTDPHDPIHVQESAEIVAKLVGFRTGGNMSKEMFELNFVLPSDKRPWLMGWNPITNFLNL* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0636 961 PANTHER CENTROMERE PROTEIN E 14 960 - -
Vra1g0636 961 MobiDBLite consensus disorder prediction 1 25 - -
Vra1g0636 961 PRINTS Kinesin heavy chain signature 106 127 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0636 961 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0636 961 PRINTS Kinesin heavy chain signature 250 268 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0636 961 PRINTS Kinesin heavy chain signature 301 322 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0636 961 Coils Coil 516 536 - -
Vra1g0636 961 Coils Coil 567 594 - -
Vra1g0636 961 Pfam Domain of unknown function (DUF3490) 777 941 IPR021881 -
Vra1g0636 961 PANTHER KINESIN-LIKE PROTEIN KIN-7A 14 960 - -
Vra1g0636 961 MobiDBLite consensus disorder prediction 1 18 - -
Vra1g0636 961 CDD KISc_CENP_E 30 351 - -
Vra1g0636 961 Pfam Kinesin motor domain 36 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0636 961 SMART kinesin_4 28 359 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0636 961 ProSiteProfiles Kinesin motor domain profile. 30 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0636 961 Coils Coil 387 421 - -
Vra1g0636 961 MobiDBLite consensus disorder prediction 653 684 - -
Vra1g0636 961 MobiDBLite consensus disorder prediction 596 628 - -
Vra1g0636 961 ProSitePatterns Kinesin motor domain signature. 249 260 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra1g0636 961 MobiDBLite consensus disorder prediction 652 696 - -
Vra1g0636 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 385 IPR027417 -
Vra1g0636 961 Coils Coil 487 507 - -
Vra1g0636 961 Gene3D Kinesin motor domain 22 382 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0636 Vra-Chr1 7383751 7389190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0636 28 425 Miscellaneous Gene Families AT5G06670 38.725 8.01e-80 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0636 K11498 - gmx:100806354 1732.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0636 1 7383751 7389190 Vra1g0636 1 7383751 7389190 ECH