Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0600 ATGAATCCACCATCAGATAAACACAATATAGAACCCAGAGACCTGGGCAATTCAGGTTCAAATATCAATAATGGAGTTAACTCACCCCAGAGGAAGGTTTTGTCAGGAACAAAGCTGCAACGTGGTTTACACAGTCCACTTATGGCAGAAGACCAAAATATTAGTGTGTATGATACTTATTTCACACCTTATGCAGAGCCATCACCAACGTTAATAAACCAAGTAGGTTCTAACAAGTTTCCTGAGGTGTTTCGAGTAAAACAAGGAAGCTATGCTGATCATCCTTCAGCCAAAATTTCAGAACTGATGAAATCAACTAGCTTGGATAATGCTCCTACTCAGTCGCTTTTGAGTGTGGTGAATGGTATTTTGGAAGAAAGTGTTGAAAGAAGAAATGGCGAAATACCCCAACGTGTGGCTTGCTTATTGAGAAAGGTTGTGCAAGAGATTGAGCGACGTATATCGACTCAAGCAGAACATTTAAAAACTCAAAACAATATTTTTAAGGCCCGTGAAGAAAAATATCACTCAAGAATCAGAGTCCTTGAAGCTCTTGCATCTGGAACTGAGGAAGAAAGAGAGATTGTTAACATAAACCAACTTCAACGTTTGAAGTCTGAGAGGATTGAAAAAGAAGAAAAGAAGAGGGAATGCGACAAAGAGGTTATTAGATATATTAAAGAGTTGAAGGATAAGACTAAGGAGATTTCAACATTGAAACAAAAGCTGGAAACGATGAAAAAAACATATGAAGTACAATGTTCACAGATGGAACAAAAAACTAAGGAGGAAAATAGAGCAGATGGCAAAGAGATTAATAGATATATTAACGAGTTAGAGGACAAAACTATGGAAATTTCAACATTAAATCAGAAACTAGAAACACTGAAAAAAACGTGTGAAGAGCAACGCTTACAATTAGAAGCAAAAGCCGAGGAGGGAAAGATGACAGATGAGAAAGATGTAATGAAAATGTTAGAGGACAAAAACAATGAAATTTCAACGTTGAGGAAAAACCTAGAAACACTAGAAACAATATCAAAAACATATGAAGTACAGAGTTCACAGTTGAAAGCACAAGTTGAGGAGAAGAACATGAGAGATGGAACAGATTCTATCAGATATATTAAAGAATTAGAGGACAAAAACGTGGAAATTTCAACGTTGAAGCAAAAACTAGACAAACTAGAAACGATGGCAAAAACATATGAAGTACAGTGTTCACAGTTGAAAGCAAAAGTTGAGGAGAAGAACATGACAGATGGAAAAGATTCTATCAGATATATTAAAGAGTTGGATGACAAAAATATGGAAATTTCAATACTAATAAAAAAACTAGAGACAATGAAAAAAGAATATGAAGTACAATGCTCAAGGTGGGAGGCAAAAGTTGAGGAGGAAAAGAGCGAAGAGGGTAAAGAGGTTAGTAGATATATTAAAGAGCTAGAGGACAAAGATATGGAAATTTCAACACTGAGGCAAAGACTAGAAACAGTGACAAAAACATACGAAGTACAATGCTCAGAACTGAAAGCAAAAGCTGAGGAGGAAAAGATGGCAAATGGAAAAGAGGCTATGAGTTATATTAAAGAGTTGGAGGACAAAAATAAGGAAATTTCTGCATATAGGCAAGAATTGGAAACAATGAAAAAACAATATGAAGTTCAATGCTCAAAGTTGAAAGCAAAAACTGAAGAGGAAAAAATAGCAAATGGGAATGAGACTATTAGATATATCAAAGAGCTAGAGGAAAAAAATATGGAGATTTCAGCATTTAAACAGGAGCTAGAAACAATGAAAAAAACACATGAAATTCAGTGCTCAGAACTGAAAGCAAACGCTGAAGAGGAAAAAATGGCGAATGGGAGAGAAATTATCAAATATACCAAAGAGCTAGAGGACAAAAATATGGAAATTTTAGCGTTTAAGCAAGAACTAGAAACAACGAAAGAAACATATGAAGCACAATGCTCAGAACTGAAAGCAAAAGCTCAAGATGAAAAAATGGCGAATGAGAAAGAAATTATGAAATATATGAAAGAAGTAGAGGACAAAAATATGGAAGTTTCATCGTTTAAGCAAGAACTAGAAACAACGAAAAAAACACATGAAGTACGATGCTCAGAATGGGAAGCAAAAGTGGAGGCTGGTAAAGAAGAGCTGAAAAAGAAATCACAAGAATATGAAAATTTGTTGGAAAAACTAAGAAATAAGGTTAAAGAGAATGAAACCCTTTACGAGGCAAAATATCAGAAGTGGATGCAGAAAGAGAACCAGATACGAAAAGATGTGAATTTTCAGTTCAGTTCCATAAAGACATTGAAATTATCATGGGAATCTATTAAGCAAGATGCTTTGAAAGAGCAAATTATTTACTCTGAGGAATGTAAAAAATTAGGTGTAAATCTGAAACCACTAGTAGATGCAGCTGAGAATTATCAAATAGTTCTTGCAGAAAACCGAAAACTGTTCAATGAAGTTCAAGAATTAAAAGGAAATATAAGAGTCTATTGTCGACTTAGACCATTTCTTCCTGGTCAAAAGGAAAAACAATCTATTGTGGAACACATTGGTGAAACTGATTTGGTTGTGGCAAATCCTTCCAAACCAGGAAAGGAAGGCCTTAGAACATTTAAGTTCAATAAGGTCTTTGGTCCAACCTCAACTCAAGCTGGGGTGTATGCTGACATACAAGCCTTTATACGATCAGTATTGGATGGGTATAACGTATGTATATTTGCTTATGGTCAAACTGGTTCAGGGAAAACTTACACAATGAGTGGTCCAAATAATGCAACACCAGAGAGTGTTGGTGTTAACTATAGAGCTCTTGATGATCTCTTCAGCATATCCACAAGCAGAAAAAGCTCCATAGAGTATGAGATTGGTGTTCAAGTAATTGAGATATACAATGAACAAGTTCGAGACTTATTAACAACTGATGCTTCAAAGAAACTTGGGATACTGAGTAATGCTCAAGCAAACGGATTAGCAGTGCCTGATGCTACCATGCAACCTGTGAAATCACCTGAAGATGTCATAAAGCTAATGGACATTGGTCTGAAAAATAGAGCTAAGGGTTCGACAGCTATGAATGAAAGAAGTAGTCGTTCTCACAGTGTGGTCTCAATTCATGTTCGTGGGATGGATAAAAAGGCTGGTTCCTCTCTTCATGGTAATCTTCATTTGGTAGATTTAGCAGGAAGTGAAAGAGTTGATCGGTCTGAAGTAACTGGGGATAGACTCAAGGAAGCACAACATATTAACAAATCACTATCTGCTCTTGGAGATGTCATTTTTGCACTTTCTCAGAAGAGTTCTCATGTGCCATATAGAAATAGCAAGCTCACTCAACTTCTGCAAACATCTCTTGGTGGTCAAGCAAAAACACTCATGTTGGTCCAAATTAACTCTGATGTAAAGTCCTTCTCTGAATCTTTGAGTACTTTAAAGTTTGCTGAGAGAGTTTCTGGAGTTGAGTTAGGAGCTGCTAAAAGTAGTAAAGAAGGAAGAGATGTTAGAGAATTAATGGAACAGGTGGCTTCTTTGAAGGATACAATTTCTATTAAAGATGAGGAGATTGAGAAGTTACAATTACTTAAGGATCTAAAAAATGTATATCCTGGTGCTAATTCTGAGAACAGTGAAACTGCCTAA 3657 0.3593 MNPPSDKHNIEPRDLGNSGSNINNGVNSPQRKVLSGTKLQRGLHSPLMAEDQNISVYDTYFTPYAEPSPTLINQVGSNKFPEVFRVKQGSYADHPSAKISELMKSTSLDNAPTQSLLSVVNGILEESVERRNGEIPQRVACLLRKVVQEIERRISTQAEHLKTQNNIFKAREEKYHSRIRVLEALASGTEEEREIVNINQLQRLKSERIEKEEKKRECDKEVIRYIKELKDKTKEISTLKQKLETMKKTYEVQCSQMEQKTKEENRADGKEINRYINELEDKTMEISTLNQKLETLKKTCEEQRLQLEAKAEEGKMTDEKDVMKMLEDKNNEISTLRKNLETLETISKTYEVQSSQLKAQVEEKNMRDGTDSIRYIKELEDKNVEISTLKQKLDKLETMAKTYEVQCSQLKAKVEEKNMTDGKDSIRYIKELDDKNMEISILIKKLETMKKEYEVQCSRWEAKVEEEKSEEGKEVSRYIKELEDKDMEISTLRQRLETVTKTYEVQCSELKAKAEEEKMANGKEAMSYIKELEDKNKEISAYRQELETMKKQYEVQCSKLKAKTEEEKIANGNETIRYIKELEEKNMEISAFKQELETMKKTHEIQCSELKANAEEEKMANGREIIKYTKELEDKNMEILAFKQELETTKETYEAQCSELKAKAQDEKMANEKEIMKYMKEVEDKNMEVSSFKQELETTKKTHEVRCSEWEAKVEAGKEELKKKSQEYENLLEKLRNKVKENETLYEAKYQKWMQKENQIRKDVNFQFSSIKTLKLSWESIKQDALKEQIIYSEECKKLGVNLKPLVDAAENYQIVLAENRKLFNEVQELKGNIRVYCRLRPFLPGQKEKQSIVEHIGETDLVVANPSKPGKEGLRTFKFNKVFGPTSTQAGVYADIQAFIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNNATPESVGVNYRALDDLFSISTSRKSSIEYEIGVQVIEIYNEQVRDLLTTDASKKLGILSNAQANGLAVPDATMQPVKSPEDVIKLMDIGLKNRAKGSTAMNERSSRSHSVVSIHVRGMDKKAGSSLHGNLHLVDLAGSERVDRSEVTGDRLKEAQHINKSLSALGDVIFALSQKSSHVPYRNSKLTQLLQTSLGGQAKTLMLVQINSDVKSFSESLSTLKFAERVSGVELGAAKSSKEGRDVRELMEQVASLKDTISIKDEEIEKLQLLKDLKNVYPGANSENSETA* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0600 1218 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 683 1201 - -
Vra1g0600 1218 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 15 474 - -
Vra1g0600 1218 Coils Coil 272 313 - -
Vra1g0600 1218 Coils Coil 429 470 - -
Vra1g0600 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 1197 IPR027417 -
Vra1g0600 1218 Coils Coil 525 563 - -
Vra1g0600 1218 Coils Coil 201 260 - -
Vra1g0600 1218 Coils Coil 579 620 - -
Vra1g0600 1218 PRINTS Kinesin heavy chain signature 907 928 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0600 1218 PRINTS Kinesin heavy chain signature 1029 1046 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0600 1218 PRINTS Kinesin heavy chain signature 1060 1078 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0600 1218 PRINTS Kinesin heavy chain signature 1109 1130 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0600 1218 Coils Coil 632 681 - -
Vra1g0600 1218 MobiDBLite consensus disorder prediction 1 33 - -
Vra1g0600 1218 Coils Coil 323 346 - -
Vra1g0600 1218 Coils Coil 1173 1193 - -
Vra1g0600 1218 Pfam Kinesin motor domain 839 1157 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0600 1218 SMART kinesin_4 831 1167 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0600 1218 PANTHER KINESIN-LIKE PROTEIN KLP-3 683 1201 - -
Vra1g0600 1218 PANTHER KINESIN-LIKE PROTEIN KLP-3 15 474 - -
Vra1g0600 1218 Coils Coil 376 413 - -
Vra1g0600 1218 Gene3D - 621 661 - -
Vra1g0600 1218 Gene3D - 318 358 - -
Vra1g0600 1218 Gene3D - 670 711 - -
Vra1g0600 1218 Gene3D - 268 305 - -
Vra1g0600 1218 Gene3D - 521 561 - -
Vra1g0600 1218 Gene3D - 217 258 - -
Vra1g0600 1218 Gene3D - 571 611 - -
Vra1g0600 1218 Gene3D - 370 412 - -
Vra1g0600 1218 Gene3D - 469 511 - -
Vra1g0600 1218 Gene3D - 420 461 - -
Vra1g0600 1218 Coils Coil 693 752 - -
Vra1g0600 1218 ProSiteProfiles Kinesin motor domain profile. 833 1159 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0600 1218 MobiDBLite consensus disorder prediction 14 33 - -
Vra1g0600 1218 Coils Coil 475 495 - -
Vra1g0600 1218 Gene3D Kinesin motor domain 775 1161 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0600 Vra-Chr1 6985353 6990960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0600 821 1193 Calmodulin-binding Proteins AT5G65930 37.995 4.17e-66 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0600 K10406 - gmx:100779403 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0600 1 6985353 6990960 Vra1g0600 1 6985353 6990960 ECH
Vra7g3140 7 51187940 51195086 Vra1g0600 1 6985353 6990960 PCT