Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0584 ATGGAAGATGATCACTTTCCTCAGATCAAAGGTGTTGTTATAATCTCCCTTCCACCCCCAGATAACCCTTCTTTGGGAAAAACCATCACTGCTATTACTTTCTCTGACCCTTCTTCTCCTCAACCCTCACTTCTTCAACAACCTGGCCAAAACCTAACAAACCTCAATGATCACAACAATACTGATCCTTCCCTTCACTCAAACCCATCTAATACTCAGCTTAGTTTTTCACTCAGAACACTCTTCCACGCCACCCCAGTGAAGCTTTTCTCCTTCTTTGGTGCTCTTCTTTTTGCTCTCTTTCTCTATGGTTCTGTTTCTTCAACCACCACTCTGGAACTGAGTGGCCCCAAGAATGATGGTGATGATGATGCCAAACCCGGATCATATTTTTTCCCTCTGTATCCTAAATTTGGTGTTTTGGGGCAGAAGAACATGAAGCTCCAATTGGGGAAGCTTGTTCATAAAGAAAAGATTTTGACACAAACAAAAAATAGGGTTGGTTCTGAGGTTGTTGCCGTTGACTCTTCTTCGGTTTTTCCTGTCAGTGGCAATGTTTTTCCGGACGGATTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAGAAGTTATTTTCTTGATGTGGATACAGGGAGTGACTTAACCTGGATGCAGTGTGATGCTCCTTGCACAAGTTGTGGAAAGGGAGCTCATGCCCTATACAAGCCCACAAGATCCGATGTAGTATCATCCATGGACTCTCTCTGCTTGGATGTTCAGAAAAATCAGAAGAATGGGCATCACGAAAGTTTGCAACAGTGTGACTATGAAATTGAATATGCAGATAGGAGTTTTTCCTTGGGAGTTCTTATTAGAGACGATCTTCATCTTGTATCTAAAAATGGATCCAAAATCAAGCTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTACTTTTGAACACATTGGCAAAGACAGATGGAATCATGGGACTGAGCAGGGCAAAAGTGAGCCTACCTAACCAGTTAGCAAGTAAAGGGCTTATTAAGAATGTGGTTGGTCATTGCTTGAGCAATGATGAAGTCGGTGGAGGTTACATGTTTTTGGGTGATGATTTCTTGCCATATTGGGGTATGACTTGGGTACCAATGGCCTATACCCTTACTACGGATTTATACCAAACTGAGATTTTTGGAATAAATTATGGAAATCGGCAACTCAGTTTTGATGGCCAAAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGTTCTTATACATATTTCCCAAAAGAAGCATACTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGGTTGAAACTCGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCAAATTTCCCAATCAAATCTGTCAAAGATGTCAAGGATTACTTCAAGACCTTAACTCTTCGGTTTGGAAACAAGTGGTGGATTTTGTCCACAATTTTTCATATACCTCCAGAGGGTTACTTGATCATTAGTAACAAAGGGAATGTGTGCTTGGGTATCCTTGATGGTAGTGATGTAAACGATGGATCCTCAATTATTCTTGGAGACATTTCATTCAGAGGATACTTAGTTGTGTATGATAATGCAAAGCAGAAAATTGGTTGGAAGCGAGCAGACTGTGACATGTCAAGCAGAAGATTGAGAAAGAAAAACAGTTTTATCCCTGATACCATGCTATAA 1716 0.4038 MEDDHFPQIKGVVIISLPPPDNPSLGKTITAITFSDPSSPQPSLLQQPGQNLTNLNDHNNTDPSLHSNPSNTQLSFSLRTLFHATPVKLFSFFGALLFALFLYGSVSSTTTLELSGPKNDGDDDAKPGSYFFPLYPKFGVLGQKNMKLQLGKLVHKEKILTQTKNRVGSEVVAVDSSSVFPVSGNVFPDGLYFTILRVGNPPRSYFLDVDTGSDLTWMQCDAPCTSCGKGAHALYKPTRSDVVSSMDSLCLDVQKNQKNGHHESLQQCDYEIEYADRSFSLGVLIRDDLHLVSKNGSKIKLNFVFGCGYDQEGLLLNTLAKTDGIMGLSRAKVSLPNQLASKGLIKNVVGHCLSNDEVGGGYMFLGDDFLPYWGMTWVPMAYTLTTDLYQTEIFGINYGNRQLSFDGQSKVGKVVFDSGSSYTYFPKEAYLDLVASLNEVSGLKLVQDDSDTTLPICWQANFPIKSVKDVKDYFKTLTLRFGNKWWILSTIFHIPPEGYLIISNKGNVCLGILDGSDVNDGSSIILGDISFRGYLVVYDNAKQKIGWKRADCDMSSRRLRKKNSFIPDTML* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0584 571 PANTHER ASPARTYL PROTEASES 16 556 IPR001461 GO:0004190|GO:0006508
Vra1g0584 571 SUPERFAMILY Acid proteases 183 554 IPR021109 -
Vra1g0584 571 MobiDBLite consensus disorder prediction 36 68 - -
Vra1g0584 571 Pfam Xylanase inhibitor N-terminal 192 367 IPR032861 -
Vra1g0584 571 Gene3D Acid Proteases 170 367 IPR021109 -
Vra1g0584 571 Pfam Xylanase inhibitor C-terminal 404 548 IPR032799 -
Vra1g0584 571 PRINTS Pepsin (A1) aspartic protease family signature 198 218 IPR001461 GO:0004190|GO:0006508
Vra1g0584 571 PRINTS Pepsin (A1) aspartic protease family signature 414 425 IPR001461 GO:0004190|GO:0006508
Vra1g0584 571 PRINTS Pepsin (A1) aspartic protease family signature 524 539 IPR001461 GO:0004190|GO:0006508
Vra1g0584 571 Gene3D Acid Proteases 373 554 IPR021109 -
Vra1g0584 571 ProSiteProfiles Peptidase family A1 domain profile. 192 548 IPR033121 -
Vra1g0584 571 PANTHER ASPARTYL PROTEASE APCB1 16 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0584 Vra-Chr1 6857917 6861703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0584 174 553 Miscellaneous Gene Families AT1G77480 45.170 1.36e-108 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0584 - - gmx:100810687 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0584 1 6857917 6861703 Vra1g0584 1 6857917 6861703 ECH