Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0576 ATGGCGCATTTTCTTCTCTCTCTATGCGCCATTTTCACCATTTTCACAACCTTATCTCTCACCTATTCTCGCACCATCACCATTCCTTCACACACCAACCTTCTCAATATCTCTTCATCCCTTCACCAAGCCAACCAAATCATCTCCTTCAAACCCCAAAACCCTCTCCAACAAGCTTTAACTCAACAGCAAAACCCCACTTCACCTTCTTCCTCTTTCTTCTCCGTTCAACTCCACACAAGAGAAACCCTCGTCAATGAGCAACACCCAGATTACAAAAATCTAGTTTTGGCCCGACTCGCCCGCGACTCGGCACGAGTCAACTCGCTCCTGACCAAACTGCAGCTCACACTCTCTGGCGTCAAAAGATCGGACCTTTACCCGACCAAGACGGAGGTCGGACTCGAAGACCTCTCCACGCCTGTCTCCTCCGGCACCTCCCAGGGAAGCGGCGAGTACTTCTCACGCATCGGCGTCGGCCAGCCCGCAAAGCCCTTCTACATGGTCCTCGACACAGGCTCCGACGTCAACTGGCTCCAATGCAAACCCTGCTCAGATTGTTACCAACAATCCGACCCGATTTTCGACCCTACATCATCCTCCTCGTACTACCCGTTAACCTGCGACGCGCAGCAGTGTCAGGACCTTGAAATGTCGGCTTGCAGAAACAGTAGATGCCTCTACCAGGTTTCCTACGGAGATGGGTCGTTCACCGTAGGCGAGTACGTCACTGAAACGGTGTCGTTCGGTGGGTCCGGGTCAGTTAATCGGGTCGCGATCGGGTGCGGGCACGATAACGAGGGGCTGTTCGTTGGAGCGGCGGGGCTTCTCGGCCTTGGTGGTGGGCCGCTGTCATTAACCTCGCAAATCAAAGCGGCGTCGTTTTCGTACTGTTTAGTGGATCGCGACTCTGGTAAATCGTCCACTCTTGAGTTCAACTCACCTCGACCCAGTGACTCGGTCACCGCACCGCTGCTGAAGAACCGCCAAGTGAACACCTTCTACTACGTTGAACTCACCGGATTTAGCGTCGGCGGTGAGATGGTCTCCGTCCCACCAGAAACTTTCGCCGTCGATCAGTCCGGTGTCGGCGGGGTGATCGTCGATTCCGGTACCGCCATAACTCGCCTCCGGACTCAGGCCTACAACGCCGTGCGCGACGCATTCAAGAGGATGACCCAGAACCTCCGTCCCGCTGAGGGCGTTGCGCTGTTCGACACGTGCTACGACCTGTCGTCCCTGCAGTCCGTGCGCGTGCCGACGGTGTCGTTTCACTTCGCCGGCGACAAGACGTGGGCGCTTCCGGCGAAGAATTATCTGATTCCGGTAGACGGCGCCGGAACTTACTGTTTCGCGTTTGCGCCAACGGCGTCGTCTCTGTCGATCATAGGGAACGTGCAGCAGCAGGGGACACGTGTCAGTTTCGATCTAGCGAACTCTGTAGTGGGATTCTCTCCCAACAAGTGCTAG 1470 0.5585 MAHFLLSLCAIFTIFTTLSLTYSRTITIPSHTNLLNISSSLHQANQIISFKPQNPLQQALTQQQNPTSPSSSFFSVQLHTRETLVNEQHPDYKNLVLARLARDSARVNSLLTKLQLTLSGVKRSDLYPTKTEVGLEDLSTPVSSGTSQGSGEYFSRIGVGQPAKPFYMVLDTGSDVNWLQCKPCSDCYQQSDPIFDPTSSSSYYPLTCDAQQCQDLEMSACRNSRCLYQVSYGDGSFTVGEYVTETVSFGGSGSVNRVAIGCGHDNEGLFVGAAGLLGLGGGPLSLTSQIKAASFSYCLVDRDSGKSSTLEFNSPRPSDSVTAPLLKNRQVNTFYYVELTGFSVGGEMVSVPPETFAVDQSGVGGVIVDSGTAITRLRTQAYNAVRDAFKRMTQNLRPAEGVALFDTCYDLSSLQSVRVPTVSFHFAGDKTWALPAKNYLIPVDGAGTYCFAFAPTASSLSIIGNVQQQGTRVSFDLANSVVGFSPNKC* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0576 489 Pfam Xylanase inhibitor C-terminal 335 485 IPR032799 -
Vra1g0576 489 Gene3D Acid Proteases 313 489 IPR021109 -
Vra1g0576 489 PANTHER PROTEIN ASPARTIC PROTEASE IN GUARD CELL 1 11 489 - -
Vra1g0576 489 PANTHER ASPARTYL PROTEASES 11 489 IPR001461 GO:0004190|GO:0006508
Vra1g0576 489 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 366 377 IPR001969 GO:0004190|GO:0006508
Vra1g0576 489 Pfam Xylanase inhibitor N-terminal 153 312 IPR032861 -
Vra1g0576 489 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 168 179 IPR001969 GO:0004190|GO:0006508
Vra1g0576 489 Gene3D Acid Proteases 129 312 IPR021109 -
Vra1g0576 489 CDD cnd41_like 152 489 IPR033873 -
Vra1g0576 489 ProSiteProfiles Peptidase family A1 domain profile. 153 485 IPR033121 -
Vra1g0576 489 SUPERFAMILY Acid proteases 147 489 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0576 Vra-Chr1 6733645 6735285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0576 144 489 Miscellaneous Gene Families AT1G77480 26.289 5.58e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0576 K22683 - gmx:100784849 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0576 1 6733645 6735285 Vra1g0576 1 6733645 6735285 ECH