Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0575 ATGGAAGCTGCATTAAGCACTGCACTTGCTCTTTCACCTAACCAACTATTCAATGCAGTAAATCCTGGAGATAAAAACTTTGCTTTGAAATATTGCAAAGATCGTACTGTTGTAATGACAATGGCAGCCACTGGAATATTAGGAAAAGGTGGAGGGTTGATTGAGAGGCCAACCATAGAGACAACAACACCTGGAAGGGAATCTGAATTTGACGTAAGGAAATCGCGGAAAACATCTCCACCATTCCGAGTTTTGCTGCACAATGACAACTTCAACAAGAGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCTGGAATGACAATTGATAATGCAGTTAACATCATGCAGGAGGCACATCATAATGGATTAGCAGTGGTGATCACATGTGCTCAAGTGGATGCTGAAGACCACTGCATGCAGTTGAGAGGAAACGGCCTTTTAAGCTCAATCGAGCCAGCTGATGGTGGTGGTTGCTGA 483 0.4306 MEAALSTALALSPNQLFNAVNPGDKNFALKYCKDRTVVMTMAATGILGKGGGLIERPTIETTTPGRESEFDVRKSRKTSPPFRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAVNIMQEAHHNGLAVVITCAQVDAEDHCMQLRGNGLLSSIEPADGGGC* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0575 160 SUPERFAMILY ClpS-like 76 153 IPR014719 -
Vra1g0575 160 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS 1 158 - -
Vra1g0575 160 Pfam ATP-dependent Clp protease adaptor protein ClpS 77 145 IPR003769 GO:0030163
Vra1g0575 160 Gene3D - 76 154 IPR014719 -
Vra1g0575 160 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 1 158 IPR022935 GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0575 Vra-Chr1 6729326 6731235 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0575 K06891 - gmx:100306117 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0575 1 6729326 6731235 Vra1g0575 1 6729326 6731235 ECH