Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0557 ATGCATAGATATTTTCAGCGTATTAACGTGGAGCGACCTGCCACCGCTTCGACGGTTGACAAATTCGACCGCCACGGTTCTGCTGCCGCTAGTCAACCGCCGCCGACCGACGATGTCAGAGGAACCGATACGCCGCCGGAGAAGGTGCCTCGTCGCGTTTTGCCGGCGAATTTCGCGCCAAAAGGGAACAACTCTGGTCCCTCCTTGTTTGAGAGCATCATGCACAAATTCGTCAAGGTCGACGACAACGAAAGAATCACTAAGAGGAGCTTGCCATTGAATGGTAGTTTGTCTAAATCTTCTCAACCAGTGGGAGTACGTGTTGATACTGATCGTGAAGGGGTGCACAAGGAAGAAGCAAAAGATAATGCTAGGAGTCTCAAGGAAAATGCTAATCAGGAAAACATGGCACTGATTGTAACCGATGACGATGTTGCTGGACCAGAAACCCCAGGGATGCAGCCTCTTTCTTCACAGGTAAAGCGTAGTCGTGATGCTGGATCCAAGTTTGGTTCCTTGCTAAATTCTGGCAAACGAGTCAGGTTTCTCGATGATTCAATGGCATTGGACACGACTAAGAAGGAAGTAGAGATGGCCAGCAAGTTTGAGTGGCTTGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGCCGAATAATCCTTTGTATGACAGGACGACTCTTTATATTCCGCCAGAAGTTTTGTCAAAACTGTCAGCATCACAGAAACAGTATTGGAGTGTCAAATGTAAATATATGGATGTTGTGCTATTTTTTAAAGTGGGAAAATTTTATGAGCTCTATGAAATGGATGCTGACATTGGTCATAAGGAGCTTGATTGGAAAATAACTTTAAGTGGTGTTGGAAAATGTCGACAGGTTGGTATATCTGAAAGTGGGATTGATGATGCCATTCAAAAGCTGGTTGCACGTGGGTATAAGGTTGGACGAGTGGAGCAGTTAGAGACATCTGAAGCAGCAAAAGCTAGGGGGGCTAACTCTGTTGTTCGGAGAAAGTTAGTTCAAGTAGTCACTCCATCAACCAATGTTGATGGTAACATTGGTCCTGATGCTGTTCACCTCCTCGCAATAAATGAGGAAAGCAATGACTTGGATAATGGTTCCGTTGTGTATGGATTTGCTTTTGTTGATTGTGCTCGGCTCAGATTTTGGGTTGGCTCCATAGAGGACGATACGTCCTGTTCTGCTTTAGGGGCCTTATTGATGCAAGTATCACCCAAGGAAGTTATATATGACAGCAGAGGGTTGTCCAAAGAAGCTCAGAAAGCACTTAGAAAATTCTCATTAATTGGTTCGGCAGCACTACAGTTCACTCCAGTTCAGTCAATCACTGACTCGGTGAACTCTGAAATTAGGGATTTAATTCACTCAAAGGGATACTTCAAAGGATCTTCTCATTCACTGGACCATGTGCTGAACAACGTGATTCATCGTGAAATCACCTTGTCTGCTCTGGGTGGATTGATTGGTCATCTGGATAGATTGATGTTAGATGATGTCCTACAGAGTGGGGATTTGTATTCATACCAAGTTTACAGGGGTTGCGTGAAAATGGATGGTCCAACAATGATGAATCTAGAACTCTTTGTTAATAATGAGGATGGTAGCAAATCAGGTTCCTTGTACAATTGTCTGGATAAGTGTGTAACTTCATCTGGAAAGCGACTCCTTAGGAACTGGATCTGCTGTCCGTTGGTAGATGCTGAAATAATTAACAACAGGCTTGATGTAGTGGATGATCTAATGGCTAACCCAGAGATTATATCACACATTGCTCAACATCTTCGCAAGCTTCCAGACTTGGAACATTTGCTTGGCCGAATTAAGTCCAGCCTTCAATTATCAGGCCCTCTCTTACTGCCCTTGTTAGGAAAGAAAATATTGAAGCAGAGGGTGAAAGTGTTTGGATCACTAGTGAATGGCCTTCGGACTGCTTTGAGTTTGTTGCTTCTTTTAATGAAAGAGCAGCCTCTAATGTCATCTTTGACCAAAGTTTTTAAACTACCACTTCTGACTGGTAGTGAGGGCCTTGATCAATTTCTTATTCAGTTTGAAGCAGCTGTGCACAGTGACTTCCCAAATTACCAGAATCATGACGTCACAGATTCGGATGCTGAAACGCTCACAATTCTTGCTGAATTATTTTTGGAGAAAGCTGTTCAGTGGTTTGAAGTGGTTCATGCCATCAATTGCATTGACGTATTACGATCTTTTGCCGTCACTTCTAGCTTTTCTTGTGGAAATATGTCTAGGCCGGTCATAGTGGCATCAAAAGGAACAGGCGGTGACACTGGAGGAACTGTGCTCAAGATGAAGGGACTATGGCATCCATTTGCCCTTGGAGACAGCGGGTGTTTGCCTGTTCCAAACGACATAATCCTTGGTGAGAGTGAAGATGGATCTCATCCTCGCACTTTGCTGCTTACTGGACCAAACATGGGAGGAAAGTCAACTCTTCTGCGTTCCACCTGCCTGGCTGTTATTATGGCCCAGTTAGGCTGTTATGTGCCATGTGAAAGTTGTGTTCTCTCAGTTGTGGATATTATATTCACACGACTTGGAGCCAAAGATAGAATCATGACAGGCGAGAGTACCTTCTATATTGAGTGTACAGAAACTGCTTCGGTGCTTCAGAATGCCACTCAAGATTCTCTTGTTATTCTTGATGAATTGGGTCGAGGAACAAGCACTTTTGATGGCTACGCCATTGCATATGCTGTATTCCGGCATCTGATTGAGAAGGTTAACTGTCGCATGCTATTTGCCACTCATTACCATCCGCTTACGAAAGAGTTTGCCTCTCATCCACGCGTTACAATGCAACACATGGCTTGTGCTTTCAAGTCAAAATCTGACACTTATTCCAAGCGTGATCAAGAATTAGTTTTCCTATATAAGCTTGCCTCCGGAGCGTGTCCAGAGAGCTACGGATTGCAGGTTGCCCTCATGGCTGGAATCCCAGAAAAAACGGTAAACATTGCTTCTAAGGCTAGCCAACGCATGAAAAAATCAATTGGACAAAGTTTTAGGACAAGCGAACAGAGATCAGAGTTCTCAACCCTTCATGAAGAATGGTTGAAAACCTTGGTGTCTATCTCACGAATAGAAGATTGTAACTCGCTGGATGAAGATGTTTTGGATACATTGATCTGTGTGTGGTACGAACTGAAAACTTCATTTGTATCAGGCAAGTGCAGATGA 3222 0.4392 MHRYFQRINVERPATASTVDKFDRHGSAAASQPPPTDDVRGTDTPPEKVPRRVLPANFAPKGNNSGPSLFESIMHKFVKVDDNERITKRSLPLNGSLSKSSQPVGVRVDTDREGVHKEEAKDNARSLKENANQENMALIVTDDDVAGPETPGMQPLSSQVKRSRDAGSKFGSLLNSGKRVRFLDDSMALDTTKKEVEMASKFEWLDPSRIRDANGRRPNNPLYDRTTLYIPPEVLSKLSASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDADIGHKELDWKITLSGVGKCRQVGISESGIDDAIQKLVARGYKVGRVEQLETSEAAKARGANSVVRRKLVQVVTPSTNVDGNIGPDAVHLLAINEESNDLDNGSVVYGFAFVDCARLRFWVGSIEDDTSCSALGALLMQVSPKEVIYDSRGLSKEAQKALRKFSLIGSAALQFTPVQSITDSVNSEIRDLIHSKGYFKGSSHSLDHVLNNVIHREITLSALGGLIGHLDRLMLDDVLQSGDLYSYQVYRGCVKMDGPTMMNLELFVNNEDGSKSGSLYNCLDKCVTSSGKRLLRNWICCPLVDAEIINNRLDVVDDLMANPEIISHIAQHLRKLPDLEHLLGRIKSSLQLSGPLLLPLLGKKILKQRVKVFGSLVNGLRTALSLLLLLMKEQPLMSSLTKVFKLPLLTGSEGLDQFLIQFEAAVHSDFPNYQNHDVTDSDAETLTILAELFLEKAVQWFEVVHAINCIDVLRSFAVTSSFSCGNMSRPVIVASKGTGGDTGGTVLKMKGLWHPFALGDSGCLPVPNDIILGESEDGSHPRTLLLTGPNMGGKSTLLRSTCLAVIMAQLGCYVPCESCVLSVVDIIFTRLGAKDRIMTGESTFYIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRMLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTYSKRDQELVFLYKLASGACPESYGLQVALMAGIPEKTVNIASKASQRMKKSIGQSFRTSEQRSEFSTLHEEWLKTLVSISRIEDCNSLDEDVLDTLICVWYELKTSFVSGKCR* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0557 1073 MobiDBLite consensus disorder prediction 109 128 - -
Vra1g0557 1073 Pfam MutS domain II 361 508 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 MobiDBLite consensus disorder prediction 92 130 - -
Vra1g0557 1073 CDD ABC_MSH6_euk 777 1001 - -
Vra1g0557 1073 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 224 1063 - -
Vra1g0557 1073 SUPERFAMILY DNA repair protein MutS, domain III 526 750 IPR036187 -
Vra1g0557 1073 SUPERFAMILY DNA repair protein MutS, domain II 378 536 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 Gene3D - 526 752 - -
Vra1g0557 1073 Pfam MutS domain V 814 1008 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 SMART DNAend 543 789 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 Pfam MutS domain I 241 351 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 224 1063 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vra1g0557 1073 Gene3D MutS, connector domain 359 525 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 MobiDBLite consensus disorder prediction 1 68 - -
Vra1g0557 1073 Gene3D DNA repair protein MutS, domain I 196 357 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 SMART mutATP5 810 1006 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 772 1009 IPR027417 -
Vra1g0557 1073 SUPERFAMILY DNA repair protein MutS, domain I 227 348 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 PIRSF Msh6 703 1054 IPR017261 GO:0006298|GO:0030983
Vra1g0557 1073 PIRSF Msh6 77 701 IPR017261 GO:0006298|GO:0030983
Vra1g0557 1073 ProSitePatterns DNA mismatch repair proteins mutS family signature. 891 907 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 Coils Coil 117 137 - -
Vra1g0557 1073 Pfam MutS domain III 529 746 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra1g0557 1073 Gene3D - 770 1053 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0557 Vra-Chr1 6514486 6523214 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0557 K08737 - gmx:100818859 1849.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0557 1 6514486 6523214 Vra1g0557 1 6514486 6523214 ECH