Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1456 ATGGCAGTTTCTGCAATAGGTTTTGAAGGTTATGAAAAGAGGTTGGAAATATGCTTTTCCCAACCAGGAATATTTGCTGACCCTGAAGGAAGGGGTTTAAGAGTTCTTACGAAATCCCAGTTGGATGAGATCCTAACACCAGCTGCTTGCACCATAGTCTCTTCGCTCTCAAATGATGATGTTGACTCCTATGTACTGTCTGAGTCCAGCCTCTTTGTTTATGCGTACAAGATCATCATCAAAACCTGTGGGACTACAAAGTTACTTCTTGCAATCCCGCCCATACTGAAGTTCGCTGATATGCTTTCTCTTAAAGTTAGGTCTGTAACGTATACCAGGGGAAGTTTCATCTTTCCTGGTGCTCAGCCATATCCCCATCGCTGCTTTACCGAGGAAGTAGCAATCCTTAATGACTACTTTGGGAAACTTGGATTAGGGAGCATGGCTTATATAATGGGTAGTCCAGACAAAAAGCAGAAATGGCATATCTATTCTGCATCTGCTGATTCTGTAATGTCATCCGACAAGAATATTTATACTCTAGAGATGTGTATGACGGGCCTTGATAGAGAGAAAGCACAAATTTTCTACAAAGAACAATCTGCTTCAGCTGCCATGATGACTGTTAACTCTGGCATCAGAAAGATTCTTCCGAATTCTGAGATATGCGATTTCGACTTTGAGCCATGTGGTTATTCAATGAATTCTGTTGAAGGGGGTGCTGTTTCTACCATTCATATTACTCCTGAAGATGGATTCAGTTATGCAAGCTTTGAGACTGTGGGCTACGACTTTAAAGTTGTGAACCTGAACGAGTTGGTAGACAGGGTTTTGTCATGTTTCCTTCCGAATGAATTTTCTGTAGCAATTCATGCGGATGGTGGAAGCAAGCCCTTTGAACATATGTTTTTTGTGGATGTGAAGGGATACTGTCGTGAAGAGTGGAGCCACGAAGGGCTTGGAATGGGTGGTTCTGTTGTCTACCAAAGATTCGTCAAGATTAGTGACTGTGTTTCACCTAGATCAACTCTGAAGTGTTGGAAAGATGAAGTTGAAGAAGAGTAG 1065 0.4207 MAVSAIGFEGYEKRLEICFSQPGIFADPEGRGLRVLTKSQLDEILTPAACTIVSSLSNDDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKFADMLSLKVRSVTYTRGSFIFPGAQPYPHRCFTEEVAILNDYFGKLGLGSMAYIMGSPDKKQKWHIYSASADSVMSSDKNIYTLEMCMTGLDREKAQIFYKEQSASAAMMTVNSGIRKILPNSEICDFDFEPCGYSMNSVEGGAVSTIHITPEDGFSYASFETVGYDFKVVNLNELVDRVLSCFLPNEFSVAIHADGGSKPFEHMFFVDVKGYCREEWSHEGLGMGGSVVYQRFVKISDCVSPRSTLKCWKDEVEEE* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1456 354 SUPERFAMILY S-adenosylmethionine decarboxylase 11 333 IPR016067 GO:0004014|GO:0008295
Vra11g1456 354 TIGRFAM SAM_DCase: S-adenosylmethionine decarboxylase proenzyme 8 333 IPR001985 GO:0004014|GO:0006597|GO:0008295
Vra11g1456 354 Gene3D - 1 68 - -
Vra11g1456 354 ProSitePatterns S-adenosylmethionine decarboxylase signature. 63 73 IPR018166 GO:0004014
Vra11g1456 354 Pfam Adenosylmethionine decarboxylase 7 331 IPR001985 GO:0004014|GO:0006597|GO:0008295
Vra11g1456 354 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME 2 1 353 - -
Vra11g1456 354 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE 1 353 IPR001985 GO:0004014|GO:0006597|GO:0008295
Vra11g1456 354 Gene3D - 69 334 - -
Vra11g1456 354 PIRSF SAM_decarbox_euk 1 332 IPR001985 GO:0004014|GO:0006597|GO:0008295
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1456 Vra-Chr11 17774341 17775772 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1456 K01611 - gmx:547981 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1456 11 17774341 17775772 Vra11g1456 11 17774341 17775772 ECH