Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1453 ATGAGGCGGGTCATAAGAATGGTTGATGTGATGGGTCCAGACTTGATTAGTGATCTTCCTCAAAGCATTATAGAGAGTATTCTGGTGAAGCTTCCAATTACAGATGCTGTGAGAACTAGCATTTTATCTAGTAAATGGAGATACAAATGGGCTTCAATTACTCAACTTGTGTTTGATGACAAATGTGTGCCCTTTAGTAATGATAGGGAGATTGTTGAGAGGAGTGTTGTCAAGTTCATCACCAGGGCGTTGTTTCTTCACCAAGGGCCAATTCATAAGTTTCAAATTTCGAATTCGATGTTGCAAAGCTGTCCTGAAATTGATCAGTGGATTCTTTTCCTATCGAGGAATGATATCAAGGAGTTGGTTATGGAGATAGGAGAAGGGGAATTTTTTAGAATACCTTCAAGCCTTTTCAATTGTAGGAAGTTGACCAGGTTGGAGCTGTCGCGGTGCGAGTTGGACCCGCCGCATAGTTTTAAGGGGTTTGTGTGCTTGAGGAGCCTCAACCTTCACCAAGTTTTGATATCCCCTGATGCAGTTGAGAGCCTAATTTCCAGATGCCCTCTCTTGGAGAGTTTATCACTGTCATATTTTGATAATTTGGCTCTTACTATCTCTGCCCCGAATCTTAAATACTTGTATCTTGAAGGTGAATTCAAGGATATATGTCTTGAAGATACTCCACTTTTGGTGGAAATATCTATTGCTATGTATATGACTGATGATATTGCAGAGCACTTTGAGCAAAGCTCAAACTGCAATTTTCTCAAATTTCTTGGTGGTGTGCCTAATCTTGAGAAGCTTGTCGGGCTTATCTACTTCACAAAGTATTTGAGCATAGGTATTGATTCGGTGCATCTTCCAATAATGTACCACAATTTAGAGACTATTGAATTACATCAAGTAAATTTTGAGGATACAAAAGAGATACTTGTCATCCTTCGCATGATTACAAGTTCTCCCAACCTAAAAGAGCTACATATTTCAGGTTCATCGAACATACCCATTGCTGCAGATGCCCCGGACTTGGATTTTTGGGAAAAAGGATGCCTTTCAGATTCTTCACTTAACAGGCTTAAAACCGTGAAGTTGTCAGAAATGGGTGGTTGGCCACATGAGCTAGAATTTATCAAATATTTGCTTTGCCGTTCTCCTGTGCTTGAGACATTGAGTATCATTCCCTGTGTATTTGACATGGGGAATAATTTGAAAATGTTGATCGAATTGGTGAAATGTCGAAGAGCTTCTTCTAGAGGAGAAGTTATTTTCATCCACGAGTGA 1284 0.398 MRRVIRMVDVMGPDLISDLPQSIIESILVKLPITDAVRTSILSSKWRYKWASITQLVFDDKCVPFSNDREIVERSVVKFITRALFLHQGPIHKFQISNSMLQSCPEIDQWILFLSRNDIKELVMEIGEGEFFRIPSSLFNCRKLTRLELSRCELDPPHSFKGFVCLRSLNLHQVLISPDAVESLISRCPLLESLSLSYFDNLALTISAPNLKYLYLEGEFKDICLEDTPLLVEISIAMYMTDDIAEHFEQSSNCNFLKFLGGVPNLEKLVGLIYFTKYLSIGIDSVHLPIMYHNLETIELHQVNFEDTKEILVILRMITSSPNLKELHISGSSNIPIAADAPDLDFWEKGCLSDSSLNRLKTVKLSEMGGWPHELEFIKYLLCRSPVLETLSIIPCVFDMGNNLKMLIELVKCRRASSRGEVIFIHE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1453 427 Pfam Leucine Rich Repeat 165 189 IPR013101 -
Vra11g1453 427 PANTHER F-BOX PROTEIN-LIKE 14 397 - -
Vra11g1453 427 PANTHER - 14 397 - -
Vra11g1453 427 SMART 9598neu4hmm 350 425 IPR006566 -
Vra11g1453 427 ProSiteProfiles F-box domain profile. 13 47 IPR001810 GO:0005515
Vra11g1453 427 SUPERFAMILY RNI-like 104 412 - -
Vra11g1453 427 Gene3D Ribonuclease Inhibitor 93 419 IPR032675 -
Vra11g1453 427 SUPERFAMILY F-box domain 11 66 IPR036047 GO:0005515
Vra11g1453 427 Pfam FBD 357 393 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1453 Vra-Chr11 17735355 17737426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1453 1 220 EF-hand Containing Proteins AT5G41840 24.506 1.59e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1453 - - gmx:100781833 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1453 11 17735355 17737426 Vra11g1453 11 17735355 17737426 ECH