Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1300 ATGGATCAGTCACCATTCACGACTCCGAGAGGATCTTTGTCATCCAGCATTGGAGACGCTTCAGAGCTTGAGGCCAATCTCTCACTCAGTGATAGGCTCAAGGTTTTCAAAAGCTCCTCCTTTGATCCCAATAACTATGTCGCCTCCAAATCCCGCACCATGAACGAAAAGGAGATAAGACACTTGTGCTCTTATCTTATTGACCTGAAGAAGGCTTCAGCAGAAGAAATGCGTAAAAGTGTTCTTGCTAACTACTCAGCCTTCATACGTACGTCCAAAGAGATATCTGATCTTGAGGGAGAGTTGGTTTCCATGAGAAATCTTCTATCCACCCAGGCTGCTTTGGTTCATGGTTTAGCAGATGGGTGTGAGCTTAGTCCCATGATTAGTGGAAATGAAGATTCAGACATGGATGACATACTAGATGAAAAAACAGAACTATCCAAGACAGAAAAATGGCTAATAGGATATTTAGAAACCCTTGAGGTTCTATTAGCGGAGAAAAGAGTGGATGAAGCAATGGCTGCTTTGGAAGAAGGAGAAAAAATGGTACAAGAAATTACTGAAGTGGGAACTTTAAGTCCAAATTTATTTGAGGCATTGCAAGATGCTATTGCTGAACACAGACAAAAACTAGCAGATCAACTAGCAGATACTATCTGCCAGCCATCAACTAGCAGTGCAGAGATTCGATCAACAGCGTTGTCATTGAAAAAACTTGGGGATGGTCCTCGTGCTCACACATTACTACTAAGTTCTCGCCAAGGAACATTACAACGTACCATGAAAATCCTTCAATCCAGCAATTATGGTGGGGTTGGGCCATTTACTGCTGCCCTTTCACAGCTTGTTTTTTCCACCATTTCACAAGCAGCATCAGATTCTCTCTCAGTGTTTTCTGAAGAACCTGCATATACGTCTGAGTTAGTAACTTGGGCAGTTGCAGAGGCTGCGAAATATTCTGCTCTCCTTAAGAAATGCATTCTTGCCTCTACAGCTGCAGCAGGAGGTTTGAGAGTTGCATCTGAATGTGTTCATGTTTGCATGAGTCACTGCTATCTGCTAGAGACTACTGGGCTAGCCCTTTCCCCTGTCCTAATAAAATTTTTTAGGCCGTTTGTTGAGCAAGCACTGAAAACAAATTTGAAAAGAATTGAACAAAGTAGTTCTGCACTGGCTGCTGCAGAGGATTGGGTACTTGCTTATGCACCAACCAGTAACAGGGCTTCTGGCCAACCTCCATCTTCTCACAGTAACTTAGGTTTGCTCCAACCAAAGCTTTCAGGCAGTGCTCACAAATTCAACTCAATGGTTCAGGAACTATTTGAAGATGTTGGACCTCTTGAAATACTGCAATTGGATGTTCTTGCAGTTGAAGGCCTTATACAAGTGTTCAACTTCTATGTCCACTTGCTGATAAATGCGTTGCCAGGATCAGTGGTAACTGAGAACATTGAAGGACACAGAATTGTTAAGCTTGCTGAGACTGAAGCACAGCAGATAGCATTGATGGCAAATGCAATATTACTGGCAGATGAACTGCTTCCACGTGCTGTTGTCAAGCTTTCTAATAGCACCAGAGGTGATGAATCTCAGAAAAAAGGATCAGACAAACAGCGTGAACTCAAGAAAAGGCTCCAACGTGAAGTTGATCGCCTGCGTGACAGCTTTTGCCGGCAACATGCTCTTGAACTTATATTCACAGAAGAAGGAGAAGCTCGTCTAAATGCATTAATATATTTGGGAATGGATGGTAACGTAGAGCAGCCTGAATGGTTTCCTTCTCCAATCTTTCAGGAAATTTTTGCTAAGCTTACCGAAGTGGCAAGCCTTGCAGCAGAAATGTTTGTAGGAAGGGAAAGATTTGTGACTGTTTTATTGATGAGACTAGCAGAAACAGTGGTGCTGTGGCTTTCTGATGACCAAGCCTTCTGGGAAGAGGTTGAGACAGGATCAACACCTTTGGGTCCCATAGGCCTTCAACAGCTGTATTTGGATATGCAATTTGTGATGATATTTTCATCCCAAGGTCGTTACTTATCTCGTCATCTGCATCAAGCTATTAAAAACATTATTGAAAGGGCTATTAATGCTCTTGCTGCTACAGGTCTAGATCCCAACAGTGTCTTGCCTGAGGATGAATGGTTTGTTGAAGTGAGTGAAATTGCTATAAAGATGTTAACTGGTAGAGCTGCCTTTGATAGTGTAGAGGAAGATATTCCTAGCCCCACTTCATCCGTTCAAACATAG 2250 0.4267 MDQSPFTTPRGSLSSSIGDASELEANLSLSDRLKVFKSSSFDPNNYVASKSRTMNEKEIRHLCSYLIDLKKASAEEMRKSVLANYSAFIRTSKEISDLEGELVSMRNLLSTQAALVHGLADGCELSPMISGNEDSDMDDILDEKTELSKTEKWLIGYLETLEVLLAEKRVDEAMAALEEGEKMVQEITEVGTLSPNLFEALQDAIAEHRQKLADQLADTICQPSTSSAEIRSTALSLKKLGDGPRAHTLLLSSRQGTLQRTMKILQSSNYGGVGPFTAALSQLVFSTISQAASDSLSVFSEEPAYTSELVTWAVAEAAKYSALLKKCILASTAAAGGLRVASECVHVCMSHCYLLETTGLALSPVLIKFFRPFVEQALKTNLKRIEQSSSALAAAEDWVLAYAPTSNRASGQPPSSHSNLGLLQPKLSGSAHKFNSMVQELFEDVGPLEILQLDVLAVEGLIQVFNFYVHLLINALPGSVVTENIEGHRIVKLAETEAQQIALMANAILLADELLPRAVVKLSNSTRGDESQKKGSDKQRELKKRLQREVDRLRDSFCRQHALELIFTEEGEARLNALIYLGMDGNVEQPEWFPSPIFQEIFAKLTEVASLAAEMFVGRERFVTVLLMRLAETVVLWLSDDQAFWEEVETGSTPLGPIGLQQLYLDMQFVMIFSSQGRYLSRHLHQAIKNIIERAINALAATGLDPNSVLPEDEWFVEVSEIAIKMLTGRAAFDSVEEDIPSPTSSVQT* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1300 749 Pfam Vps51/Vps67 36 114 - -
Vra11g1300 749 Coils Coil 198 218 - -
Vra11g1300 749 Coils Coil 536 556 - -
Vra11g1300 749 Pfam Exocyst component 84 C-terminal 152 362 IPR032403 -
Vra11g1300 749 Gene3D - 142 264 IPR042561 -
Vra11g1300 749 Gene3D - 273 377 IPR042560 -
Vra11g1300 749 PANTHER EXOCYST COMPLEX COMPONENT 8 9 748 IPR033961 GO:0000145|GO:0006887
Vra11g1300 749 SUPERFAMILY Cullin repeat-like 144 378 IPR016159 -
Vra11g1300 749 PANTHER EXOCYST COMPLEX COMPONENT EXO84A 9 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1300 Vra-Chr11 15946422 15952442 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1300 K19986 - gmx:100818886 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1300 11 15946422 15952442 Vra11g1300 11 15946422 15952442 ECH