Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1289 ATGGAGTTATTCACCAAAACCAACGTGGTGAGGCTGCGGAGCCACCTCGACAAGTATCTCGTGGCCGACGCAGACGGCAGCCAGGTCCGCCAGAGCCGCAAGGCCTCCGGCCGGGGAGCGCGGTGGACAGTAGAGGAGATCACGGACGGAGGAAGCAAAAAGGTACGCCTCAGGAGCTACCACGGAAGGTACTTAACGGCGACGGAGGCACCGTTTCTGTTTGGGATGACAGGAAAAAAGGTGCTACAGAGGGATTTTGAGCCCGGCGCGGACTTCAAGCACGACTGGGAAGTGACACGCGACGGGTTCCAGGTGAAGTTGATGTGCTGGAGTGGGAAGTTCCTGCGCGCGAACGGAGGGACGCCGCCATGGCGGAGCAGCGTGACGGTGGACGAGCCGCACAGTTCGGCGACGAAGGATTGGGTTCTGTGGGACGTGGAGACCGTGGAGGCGGTGGAGGAGTTGGTGGATGATTTGTGCGACAGCACGGTTTCGTCTGTCGCTTCCGATGATTTCTCCGTCGATTCGGAACCAGCGTCGCCGATGTCCGTTTTTGCCCTCAAGTCGCCGCCGGCGAGGCGGAACTCGAACCTGATGCTGCAGGCAATAACTTCCAACAAGTTCAGAAATGGCATGGACTTCTTCCACCGCGCCAAGGCGGTCCGCCTCCGCAGCCACCACGACAAGTACTTGCTGGCGGAGGACGACGAGGAGTCCGTCACCCAAGGCCGCAACGGCTCCTCCAAGAGCGCACGCTGGCTCGTCGAATACGTCCCGGAATACGACAACATAATTCGCCTGAAAAGCTGTTACGGAAAGTACCTCACAGCCTCCAACATCAACTTCCTCCTGGGCATGACGGGCCACAAGGTCCTCCAGACCCTCCCTCAGAGGTTGGACTCCTCCGTCGAGTGGGAGCCCATCAAGGACGGAGGCCGCGTCAGGCTCAAGACTCGCTACGGCAACTTCCTCCGCGCCAATGGGGGCGTGCCGCCCTGGAGAAACTCCGTCACGCACGATATTCCTCACAGAACCGCCACCCAGGACTGGATCCTCTGGGACGTGGATGTCGTCGAGATTTATGTCAACTCTCCGGCGAATAGCAGTAAACCCTCTGCTCCCCCGTTGCCAGGTTCTGACCCTGTTCCAGTCCTGGCCAGCGCGCCGGTTCCTCCACCATCATCATTGTCTGCCAGCATTACAAGGCAACAGTCGAATGAATTGAATGGTTTGTCGCAGAAGATGGAAGGGCGGATTATTTACTACAATATTGCTGAAGAGAACGGGGAGGTGTTGGATGAAGGTTCGCAGGGCTATTCTTTGATTTTCAAAGGGAATGGAGTTGAAGAATTGACTCGAAAGTTCGAGGAAGAGACAGGTCTAGAGGGAATCATTGTATGTAATCGGAGTCCTTTGAATGGAAGGCTTTATCCTCTTCGCTTGCAGCTTCCACCAAACACCGTGACCATGCGAGTTGTTTTGGTTCTTCCCATGTCAAATGTGGCAAGAGACTTAGAGGCAGAAGGTTTACTGTGA 1536 0.5664 MELFTKTNVVRLRSHLDKYLVADADGSQVRQSRKASGRGARWTVEEITDGGSKKVRLRSYHGRYLTATEAPFLFGMTGKKVLQRDFEPGADFKHDWEVTRDGFQVKLMCWSGKFLRANGGTPPWRSSVTVDEPHSSATKDWVLWDVETVEAVEELVDDLCDSTVSSVASDDFSVDSEPASPMSVFALKSPPARRNSNLMLQAITSNKFRNGMDFFHRAKAVRLRSHHDKYLLAEDDEESVTQGRNGSSKSARWLVEYVPEYDNIIRLKSCYGKYLTASNINFLLGMTGHKVLQTLPQRLDSSVEWEPIKDGGRVRLKTRYGNFLRANGGVPPWRNSVTHDIPHRTATQDWILWDVDVVEIYVNSPANSSKPSAPPLPGSDPVPVLASAPVPPPSSLSASITRQQSNELNGLSQKMEGRIIYYNIAEENGEVLDEGSQGYSLIFKGNGVEELTRKFEEETGLEGIIVCNRSPLNGRLYPLRLQLPPNTVTMRVVLVLPMSNVARDLEAEGLL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1289 511 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 204 498 - -
Vra11g1289 511 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 194 - -
Vra11g1289 511 Gene3D - 4 148 - -
Vra11g1289 511 Pfam Domain of unknown function (DUF569) 212 353 IPR007679 -
Vra11g1289 511 Pfam Domain of unknown function (DUF569) 1 144 IPR007679 -
Vra11g1289 511 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 194 - -
Vra11g1289 511 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 204 498 - -
Vra11g1289 511 SUPERFAMILY Actin-crosslinking proteins 7 147 IPR008999 -
Vra11g1289 511 SUPERFAMILY Actin-crosslinking proteins 216 358 IPR008999 -
Vra11g1289 511 Gene3D - 220 340 - -
Vra11g1289 511 MobiDBLite consensus disorder prediction 370 390 - -
Vra11g1289 511 MobiDBLite consensus disorder prediction 366 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1289 Vra-Chr11 15742279 15749753 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1289 - - gmx:100811752 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1289 11 15742279 15749753 Vra11g1289 11 15742279 15749753 ECH
Vra11g1289 11 15742279 15749753 Vra7g0615 7 11449376 11452257 PCT