Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1275 ATGCACTTCTTCACCGCACCCTCCCTTTCGCTGCTCTCGCCTCACCTGATCGCGTCCCCCGTCGCCCCGCTCTACTTCCCCGGCTGGACCTGGCGGGCACGCCGGTTTGGGGCCGAACCTGGTTCGGTTCTCCATTCTTCTTGGAGGGGGACCTGCTACAAGGGTTTGTGCTGGTCCTGCACTGGGTTCTTGCGGCGGTGTAAGGATTGGAGCGGAGAGTTTTCGTCTCTTGAATCCGAGATTCTTGAGTTTATGCAGAGTTCTGATAAGCCCAAACATTTTCCCACCAAGGAGGAGTTGGTTGCTGCAGGAAGGATGGATTTAGTTGAGGCTATTGTCAACGAGGGAGGGTGGCTTGCGTTTGGGTGGGAATCGAATGGTGGGTCCAGTGGAATAGGCGGTCTTGAAGATAATTGTAGCTATGGGATTGACTGTTATGCCACTCGGGTTTCTGGGGTTTCTTCACCTTCCTCTTCTTCCCAAACATCCCAAACAGATGATTCAGTAGAAATTATAGCTGACAGTGAATCTGGCATTGTGGGGATATTGAATCGATTGGAGAAACAACGAAGTAGATCTTTTGGACTTGGTGTAGATAGTATTTCTTCTGAAAATAATGAAGACAAAGATGAATGGGATCATAGAACGGCTATGGATGCAATAGCTACCGGCCTTGAAAATAGTAGCAGGGCACCCTCATTTAACCCCATAAGCAGTCATCCCAGTGGTTCTCAGATCAAACCTGATCAGCATGGGTTACAGTTAGGTATGGAAAATTCAGAAAACTCACTTAAGCCAGAGATGTGGAGGAGTTGGATTGTTCAGAGAAATGGTTTTCCAGATGCAGATTTTGAAGATGCTGAAATTATTCCCAGTGAAACTCAGAAAGGAGGCATGAGTGATACTTCTGGACACCATGATATCCTGAAGAGAAGGGAGTTTTCGTCTGAACTTACAAACAATGAAACAGGATTATATTCTCTTGATGGAAAAGCAAGTCACAATGACATTAAATCCCGTATCCAGCATCTGGAATCCGAGCTATCTTCTACACTTCACTCGTTGAGGTCTAGATCAGATAAAATTACCAAGCAGATGGTTCATAAGAGCTCTTCTGATGAACTGGCAAAGCTTTCCGATGCGTGGGAATTTCAGGAAAATGAGATCATGAATGCTCAGGACAAATTGCGTTCTATACAGGCTAAGTTGGCAGTGTTAGAAGGAAAGATGTCATTGGCAATAATGGATGCACATAAGGTAGTCGAAGAAAAGCAGACGAAGATTAGTAAGGCTCAGAAGGCTTTGCAAATGCTGAAGACTACTTGTGTAGTTTGGCCAAATAATGCTTCAGAAGTACTTTTAACAGGATCATTTGATGGTTGGTCCAACAAGAGAAAGATGGAGAGGTTAAGTAGTGGTATATTTTCTGTGAGCTTGCAGCTGTATCCTGGAAGATACGAGATGAAGTTCATTGTAGATGGAGAATGGAAAATTGATCCTTTACGTCCTATTGTAACCAACGATGGCTATGAGAATAATGTTCTTATAGTTAGTGATTGA 1560 0.4442 MHFFTAPSLSLLSPHLIASPVAPLYFPGWTWRARRFGAEPGSVLHSSWRGTCYKGLCWSCTGFLRRCKDWSGEFSSLESEILEFMQSSDKPKHFPTKEELVAAGRMDLVEAIVNEGGWLAFGWESNGGSSGIGGLEDNCSYGIDCYATRVSGVSSPSSSSQTSQTDDSVEIIADSESGIVGILNRLEKQRSRSFGLGVDSISSENNEDKDEWDHRTAMDAIATGLENSSRAPSFNPISSHPSGSQIKPDQHGLQLGMENSENSLKPEMWRSWIVQRNGFPDADFEDAEIIPSETQKGGMSDTSGHHDILKRREFSSELTNNETGLYSLDGKASHNDIKSRIQHLESELSSTLHSLRSRSDKITKQMVHKSSSDELAKLSDAWEFQENEIMNAQDKLRSIQAKLAVLEGKMSLAIMDAHKVVEEKQTKISKAQKALQMLKTTCVVWPNNASEVLLTGSFDGWSNKRKMERLSSGIFSVSLQLYPGRYEMKFIVDGEWKIDPLRPIVTNDGYENNVLIVSD* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1275 519 Coils Coil 421 441 - -
Vra11g1275 519 SUPERFAMILY E set domains 440 518 IPR014756 -
Vra11g1275 519 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 50 518 - -
Vra11g1275 519 Coils Coil 375 409 - -
Vra11g1275 519 CDD E_set_AMPKbeta_like_N 440 517 - -
Vra11g1275 519 Pfam Glycogen recognition site of AMP-activated protein kinase 441 518 IPR032640 -
Vra11g1275 519 Gene3D Immunoglobulins 436 519 IPR013783 -
Vra11g1275 519 MobiDBLite consensus disorder prediction 226 252 - -
Vra11g1275 519 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 50 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1275 Vra-Chr11 15435609 15439309 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1275 - - gmx:100814629 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1275 11 15435609 15439309 Vra11g1275 11 15435609 15439309 ECH